Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.79■□□□□ 0.28
COL12A1Q99715 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.79■□□□□ 0.28
COL12A1Q99715 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.79■□□□□ 0.28
COL12A1Q99715 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
COL12A1Q99715 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL12A1Q99715 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL12A1Q99715 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.79■□□□□ 0.28
COL12A1Q99715 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 GUSBP5-202ENST00000510805 1989 ntBASIC16.79■□□□□ 0.28
COL12A1Q99715 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.79■□□□□ 0.28
COL12A1Q99715 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.79■□□□□ 0.28
COL12A1Q99715 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.79■□□□□ 0.28
COL12A1Q99715 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.79■□□□□ 0.28
COL12A1Q99715 SMG8-203ENST00000578922 2178 ntBASIC16.79■□□□□ 0.28
COL12A1Q99715 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.79■□□□□ 0.28
COL12A1Q99715 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC16.79■□□□□ 0.28
COL12A1Q99715 AC093525.10-201ENST00000625130 1569 ntBASIC16.79■□□□□ 0.28
COL12A1Q99715 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
COL12A1Q99715 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.78■□□□□ 0.28
COL12A1Q99715 SART3-203ENST00000546611 1184 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.78■□□□□ 0.28
COL12A1Q99715 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.78■□□□□ 0.28
COL12A1Q99715 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 FAM8A3P-201ENST00000427218 844 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 LINC00265-3P-201ENST00000447588 903 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 AC104819.1-201ENST00000504587 486 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 AC027601.4-201ENST00000611259 610 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
COL12A1Q99715 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.78■□□□□ 0.28
COL12A1Q99715 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
COL12A1Q99715 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 AC133561.1-201ENST00000568600 2415 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 Z83836.1-201ENST00000624605 1642 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.78■□□□□ 0.28
COL12A1Q99715 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL12A1Q99715 AC009065.1-201ENST00000564055 1225 ntBASIC16.78■□□□□ 0.28
COL12A1Q99715 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.78■□□□□ 0.28
COL12A1Q99715 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL12A1Q99715 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL12A1Q99715 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL12A1Q99715 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.77■□□□□ 0.28
COL12A1Q99715 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.77■□□□□ 0.28
COL12A1Q99715 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL12A1Q99715 AC233723.2-201ENST00000623798 2106 ntBASIC16.77■□□□□ 0.28
COL12A1Q99715 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL12A1Q99715 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL12A1Q99715 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL12A1Q99715 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.77■□□□□ 0.27
COL12A1Q99715 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL12A1Q99715 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.77■□□□□ 0.27
COL12A1Q99715 FAM197Y8-203ENST00000450145 560 ntBASIC16.77■□□□□ 0.27
COL12A1Q99715 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.77■□□□□ 0.27
COL12A1Q99715 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.77■□□□□ 0.27
COL12A1Q99715 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.77■□□□□ 0.27
COL12A1Q99715 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.77■□□□□ 0.27
COL12A1Q99715 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL12A1Q99715 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL12A1Q99715 FP700111.2-201ENST00000619190 1892 ntBASIC16.76■□□□□ 0.27
COL12A1Q99715 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
COL12A1Q99715 AL031284.1-201ENST00000419297 478 ntBASIC16.76■□□□□ 0.27
COL12A1Q99715 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.76■□□□□ 0.27
COL12A1Q99715 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.76■□□□□ 0.27
COL12A1Q99715 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.76■□□□□ 0.27
COL12A1Q99715 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
COL12A1Q99715 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 EP400NL-214ENST00000641289 2402 ntBASIC16.76■□□□□ 0.27
COL12A1Q99715 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL12A1Q99715 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL12A1Q99715 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
COL12A1Q99715 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms