Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
ATG4AQ8WYN0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ATG4AQ8WYN0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
ATG4AQ8WYN0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 AC008687.6-201ENST00000596318 630 ntBASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4AQ8WYN0 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 AL031598.1-201ENST00000561511 1773 ntBASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 TUBB8P6-201ENST00000436895 1288 ntBASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 AL109923.1-201ENST00000618799 583 ntBASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 AL121829.2-201ENST00000620908 328 ntBASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4AQ8WYN0 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 WIZP1-201ENST00000531444 2299 ntBASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4AQ8WYN0 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms