Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 LBX2-AS1-202ENST00000603175 2083 ntBASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 LINC01311-201ENST00000565162 1445 ntBASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 ILF2-202ENST00000368681 726 ntTSL 2 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 ZNF444P1-201ENST00000559497 298 ntBASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 AL136038.3-201ENST00000561909 1096 ntBASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USHBP1Q8N6Y0 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 STARP1-201ENST00000397973 869 ntBASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 AP000523.1-201ENST00000398242 1049 ntBASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 NEK4P2-201ENST00000580004 1012 ntBASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 AC012313.10-201ENST00000623509 926 ntBASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC25.31■■□□□ 1.64
USHBP1Q8N6Y0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 AC069148.1-201ENST00000608741 768 ntBASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USHBP1Q8N6Y0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 CLEC4GP1-201ENST00000596555 870 ntBASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 GPAT2P1-201ENST00000444924 1672 ntBASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USHBP1Q8N6Y0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms