Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC116Q8IYX3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CCDC116Q8IYX3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC116Q8IYX3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC116Q8IYX3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 HTR7P1-201ENST00000538670 1336 ntBASIC18.08■□□□□ 0.49
CCDC116Q8IYX3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 BX323043.1-201ENST00000641006 1765 ntBASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC116Q8IYX3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 AL161938.1-201ENST00000569833 2180 ntBASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC116Q8IYX3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 AC142381.4-202ENST00000563973 229 ntBASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 AL049812.1-201ENST00000432563 2267 ntBASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC116Q8IYX3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 AP002982.1-201ENST00000492365 877 ntBASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC116Q8IYX3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC116Q8IYX3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC116Q8IYX3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC116Q8IYX3 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC116Q8IYX3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC116Q8IYX3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms