Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT40Q6A162 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT40Q6A162 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT40Q6A162 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
KRT40Q6A162 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
KRT40Q6A162 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC22.24■■□□□ 1.15
KRT40Q6A162 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.24■■□□□ 1.15
KRT40Q6A162 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.24■■□□□ 1.15
KRT40Q6A162 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.24■■□□□ 1.15
KRT40Q6A162 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.24■■□□□ 1.15
KRT40Q6A162 KRT17P2-201ENST00000300992 1314 ntBASIC22.24■■□□□ 1.15
KRT40Q6A162 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT40Q6A162 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
KRT40Q6A162 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.23■■□□□ 1.15
KRT40Q6A162 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.23■■□□□ 1.15
KRT40Q6A162 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT40Q6A162 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
KRT40Q6A162 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT40Q6A162 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
KRT40Q6A162 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT40Q6A162 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.23■■□□□ 1.15
KRT40Q6A162 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.23■■□□□ 1.15
KRT40Q6A162 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC22.23■■□□□ 1.15
KRT40Q6A162 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT40Q6A162 AL049812.1-201ENST00000432563 2267 ntBASIC22.23■■□□□ 1.15
KRT40Q6A162 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
KRT40Q6A162 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
KRT40Q6A162 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
KRT40Q6A162 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC22.22■■□□□ 1.15
KRT40Q6A162 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.22■■□□□ 1.15
KRT40Q6A162 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.22■■□□□ 1.15
KRT40Q6A162 PPOX-219ENST00000544598 813 ntTSL 2 BASIC22.22■■□□□ 1.15
KRT40Q6A162 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.22■■□□□ 1.15
KRT40Q6A162 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC22.22■■□□□ 1.15
KRT40Q6A162 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
KRT40Q6A162 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
KRT40Q6A162 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
KRT40Q6A162 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
KRT40Q6A162 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.21■■□□□ 1.15
KRT40Q6A162 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.21■■□□□ 1.15
KRT40Q6A162 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
KRT40Q6A162 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 KRT18P35-201ENST00000510488 1269 ntBASIC22.21■■□□□ 1.15
KRT40Q6A162 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.21■■□□□ 1.15
KRT40Q6A162 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.21■■□□□ 1.15
KRT40Q6A162 AL049637.2-201ENST00000641778 930 ntBASIC22.21■■□□□ 1.15
KRT40Q6A162 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.21■■□□□ 1.15
KRT40Q6A162 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
KRT40Q6A162 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.21■■□□□ 1.15
KRT40Q6A162 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC22.21■■□□□ 1.15
KRT40Q6A162 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
KRT40Q6A162 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
KRT40Q6A162 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT40Q6A162 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
KRT40Q6A162 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
KRT40Q6A162 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.2■■□□□ 1.14
KRT40Q6A162 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.14
KRT40Q6A162 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
KRT40Q6A162 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
KRT40Q6A162 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.2■■□□□ 1.14
KRT40Q6A162 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT40Q6A162 TNXA-203ENST00000507684 2038 ntBASIC22.2■■□□□ 1.14
KRT40Q6A162 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT40Q6A162 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
KRT40Q6A162 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.2■■□□□ 1.14
KRT40Q6A162 AL160286.2-201ENST00000567150 934 ntBASIC22.2■■□□□ 1.14
KRT40Q6A162 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.2■■□□□ 1.14
KRT40Q6A162 AC012306.2-201ENST00000609350 630 ntBASIC22.2■■□□□ 1.14
KRT40Q6A162 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC22.2■■□□□ 1.14
KRT40Q6A162 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC22.2■■□□□ 1.14
KRT40Q6A162 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT40Q6A162 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT40Q6A162 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.2■■□□□ 1.14
KRT40Q6A162 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT40Q6A162 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms