Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 AC069544.1-201ENST00000609399 999 ntBASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 KRT18P6-201ENST00000555540 1265 ntBASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 AL049812.1-201ENST00000432563 2267 ntBASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC40Q4G0X9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC40Q4G0X9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 AC233263.1-201ENST00000578059 224 ntBASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC40Q4G0X9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 MTDHP1-201ENST00000605323 784 ntBASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 AC004264.1-201ENST00000608354 794 ntBASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.08■□□□□ 0.97
CCDC40Q4G0X9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms