Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC036111.1-201ENST00000533973 1582 ntBASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 AL160237.2-201ENST00000556165 472 ntBASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC88AQ3V6T2 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 CHCHD2P8-201ENST00000429873 447 ntBASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.49■■□□□ 1.35
CCDC88AQ3V6T2 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 AC092667.1-201ENST00000434301 2586 ntBASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC88AQ3V6T2 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 KRT8P11-201ENST00000409686 1436 ntBASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 MRPL3P1-201ENST00000400109 1033 ntBASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC23.47■■□□□ 1.35
CCDC88AQ3V6T2 KRT18P1-202ENST00000452408 1331 ntBASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC88AQ3V6T2 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.35
CCDC88AQ3V6T2 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms