Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.78■□□□□ 0.44
RNF4P78317 AP005242.2-201ENST00000580065 1175 ntBASIC17.78■□□□□ 0.44
RNF4P78317 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.78■□□□□ 0.44
RNF4P78317 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.78■□□□□ 0.44
RNF4P78317 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF4P78317 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RNF4P78317 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF4P78317 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF4P78317 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF4P78317 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF4P78317 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF4P78317 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
RNF4P78317 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF4P78317 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF4P78317 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF4P78317 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF4P78317 AC096733.2-201ENST00000609937 1394 ntBASIC17.77■□□□□ 0.43
RNF4P78317 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.77■□□□□ 0.43
RNF4P78317 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
RNF4P78317 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
RNF4P78317 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RNF4P78317 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 KRT8P9-201ENST00000558927 1449 ntBASIC17.76■□□□□ 0.43
RNF4P78317 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF4P78317 MFAP1P1-201ENST00000442257 1255 ntBASIC17.76■□□□□ 0.43
RNF4P78317 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF4P78317 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF4P78317 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF4P78317 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF4P78317 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF4P78317 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF4P78317 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF4P78317 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF4P78317 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
RNF4P78317 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF4P78317 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF4P78317 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 KRT8P11-201ENST00000409686 1436 ntBASIC17.74■□□□□ 0.43
RNF4P78317 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF4P78317 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF4P78317 AC211429.1-201ENST00000415277 523 ntBASIC17.74■□□□□ 0.43
RNF4P78317 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.74■□□□□ 0.43
RNF4P78317 TSPY21P-201ENST00000433481 731 ntBASIC17.74■□□□□ 0.43
RNF4P78317 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF4P78317 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF4P78317 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
RNF4P78317 PRSS44-201ENST00000515154 1146 ntBASIC17.74■□□□□ 0.43
RNF4P78317 CKBP1-201ENST00000565489 1086 ntBASIC17.74■□□□□ 0.43
RNF4P78317 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF4P78317 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms