Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HDAC4P56524 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.04■□□□□ 0.8
HDAC4P56524 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 KRT8P41-201ENST00000533985 1514 ntBASIC20.04■□□□□ 0.8
HDAC4P56524 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 KSR1P1-201ENST00000446298 240 ntBASIC20.04■□□□□ 0.8
HDAC4P56524 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.04■□□□□ 0.8
HDAC4P56524 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
HDAC4P56524 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC4P56524 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC4P56524 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
HDAC4P56524 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
HDAC4P56524 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HDAC4P56524 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HDAC4P56524 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.03■□□□□ 0.8
HDAC4P56524 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
HDAC4P56524 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.03■□□□□ 0.8
HDAC4P56524 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.03■□□□□ 0.8
HDAC4P56524 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.03■□□□□ 0.8
HDAC4P56524 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.03■□□□□ 0.8
HDAC4P56524 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
HDAC4P56524 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC4P56524 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
HDAC4P56524 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.02■□□□□ 0.8
HDAC4P56524 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.02■□□□□ 0.8
HDAC4P56524 AC073195.1-201ENST00000607241 877 ntBASIC20.02■□□□□ 0.8
HDAC4P56524 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.02■□□□□ 0.8
HDAC4P56524 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC4P56524 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
HDAC4P56524 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC4P56524 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
HDAC4P56524 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.02■□□□□ 0.79
HDAC4P56524 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC4P56524 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
HDAC4P56524 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC4P56524 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC4P56524 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC4P56524 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC4P56524 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC4P56524 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.01■□□□□ 0.79
HDAC4P56524 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.01■□□□□ 0.79
HDAC4P56524 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC4P56524 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.01■□□□□ 0.79
HDAC4P56524 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.01■□□□□ 0.79
HDAC4P56524 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms