Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.35■□□□□ 0.85
LHX1P48742 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.35■□□□□ 0.85
LHX1P48742 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
LHX1P48742 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.35■□□□□ 0.85
LHX1P48742 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LHX1P48742 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.34■□□□□ 0.85
LHX1P48742 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
LHX1P48742 FAM210CP-201ENST00000445714 574 ntBASIC20.34■□□□□ 0.85
LHX1P48742 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
LHX1P48742 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.34■□□□□ 0.85
LHX1P48742 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.34■□□□□ 0.85
LHX1P48742 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
LHX1P48742 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LHX1P48742 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LHX1P48742 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
LHX1P48742 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.33■□□□□ 0.85
LHX1P48742 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LHX1P48742 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LHX1P48742 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.33■□□□□ 0.85
LHX1P48742 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LHX1P48742 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
LHX1P48742 SLC25A3P1-201ENST00000443844 931 ntBASIC20.33■□□□□ 0.85
LHX1P48742 ECEL1P2-202ENST00000465689 757 ntBASIC20.33■□□□□ 0.85
LHX1P48742 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.33■□□□□ 0.85
LHX1P48742 AL353719.1-201ENST00000566847 864 ntBASIC20.33■□□□□ 0.85
LHX1P48742 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.33■□□□□ 0.85
LHX1P48742 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LHX1P48742 AC010653.2-201ENST00000623505 997 ntBASIC20.33■□□□□ 0.85
LHX1P48742 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LHX1P48742 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.33■□□□□ 0.84
LHX1P48742 AC092338.2-201ENST00000568827 1415 ntBASIC20.33■□□□□ 0.84
LHX1P48742 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.33■□□□□ 0.84
LHX1P48742 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LHX1P48742 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
LHX1P48742 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
LHX1P48742 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.32■□□□□ 0.84
LHX1P48742 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
LHX1P48742 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.32■□□□□ 0.84
LHX1P48742 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
LHX1P48742 AC113347.1-201ENST00000413321 391 ntBASIC20.32■□□□□ 0.84
LHX1P48742 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.32■□□□□ 0.84
LHX1P48742 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.32■□□□□ 0.84
LHX1P48742 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.32■□□□□ 0.84
LHX1P48742 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.32■□□□□ 0.84
LHX1P48742 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
LHX1P48742 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.32■□□□□ 0.84
LHX1P48742 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LHX1P48742 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.32■□□□□ 0.84
LHX1P48742 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.32■□□□□ 0.84
LHX1P48742 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.31■□□□□ 0.84
LHX1P48742 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 INGX-201ENST00000359239 846 ntBASIC20.31■□□□□ 0.84
LHX1P48742 RCN1P1-201ENST00000400413 996 ntBASIC20.31■□□□□ 0.84
LHX1P48742 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.31■□□□□ 0.84
LHX1P48742 AC007663.1-201ENST00000438948 1240 ntBASIC20.31■□□□□ 0.84
LHX1P48742 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.31■□□□□ 0.84
LHX1P48742 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LHX1P48742 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.31■□□□□ 0.84
LHX1P48742 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.31■□□□□ 0.84
LHX1P48742 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LHX1P48742 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms