Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.62■□□□□ 0.09
CDX1P47902 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC15.62■□□□□ 0.09
CDX1P47902 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CDX1P47902 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CDX1P47902 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CDX1P47902 POM121L13P-201ENST00000422362 380 ntBASIC15.62■□□□□ 0.09
CDX1P47902 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CDX1P47902 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC15.62■□□□□ 0.09
CDX1P47902 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.62■□□□□ 0.09
CDX1P47902 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.62■□□□□ 0.09
CDX1P47902 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CDX1P47902 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.62■□□□□ 0.09
CDX1P47902 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
CDX1P47902 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDX1P47902 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
CDX1P47902 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.61■□□□□ 0.09
CDX1P47902 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.61■□□□□ 0.09
CDX1P47902 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.61■□□□□ 0.09
CDX1P47902 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDX1P47902 TCF3P1-201ENST00000423021 1937 ntBASIC15.61■□□□□ 0.09
CDX1P47902 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC15.61■□□□□ 0.09
CDX1P47902 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC15.61■□□□□ 0.09
CDX1P47902 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.61■□□□□ 0.09
CDX1P47902 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC15.61■□□□□ 0.09
CDX1P47902 AC120498.8-201ENST00000614275 531 ntBASIC15.61■□□□□ 0.09
CDX1P47902 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.61■□□□□ 0.09
CDX1P47902 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDX1P47902 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.61■□□□□ 0.09
CDX1P47902 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.61■□□□□ 0.09
CDX1P47902 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDX1P47902 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 AL139384.1-201ENST00000612143 3047 ntBASIC15.6■□□□□ 0.09
CDX1P47902 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.6■□□□□ 0.09
CDX1P47902 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CDX1P47902 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.6■□□□□ 0.09
CDX1P47902 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.6■□□□□ 0.09
CDX1P47902 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
CDX1P47902 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC15.6■□□□□ 0.09
CDX1P47902 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 AC142381.4-202ENST00000563973 229 ntBASIC15.6■□□□□ 0.09
CDX1P47902 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CDX1P47902 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC15.6■□□□□ 0.09
CDX1P47902 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CDX1P47902 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDX1P47902 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC15.6■□□□□ 0.09
CDX1P47902 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.59■□□□□ 0.09
CDX1P47902 AC099398.1-201ENST00000567919 2776 ntBASIC15.59■□□□□ 0.09
CDX1P47902 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CDX1P47902 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CDX1P47902 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
CDX1P47902 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms