Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.68■□□□□ 0.58
PCNAP12004 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PCNAP12004 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 NEFHP1-201ENST00000412845 2629 ntBASIC18.68■□□□□ 0.58
PCNAP12004 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 KRT18P16-201ENST00000510337 1294 ntBASIC18.68■□□□□ 0.58
PCNAP12004 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.68■□□□□ 0.58
PCNAP12004 CD99P1-205ENST00000527459 561 ntBASIC18.68■□□□□ 0.58
PCNAP12004 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.68■□□□□ 0.58
PCNAP12004 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.68■□□□□ 0.58
PCNAP12004 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.68■□□□□ 0.58
PCNAP12004 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.68■□□□□ 0.58
PCNAP12004 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.68■□□□□ 0.58
PCNAP12004 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 ZNF815P-204ENST00000434898 1737 ntBASIC18.68■□□□□ 0.58
PCNAP12004 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCNAP12004 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.68■□□□□ 0.58
PCNAP12004 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PCNAP12004 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.67■□□□□ 0.58
PCNAP12004 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
PCNAP12004 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.67■□□□□ 0.58
PCNAP12004 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.67■□□□□ 0.58
PCNAP12004 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.67■□□□□ 0.58
PCNAP12004 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.67■□□□□ 0.58
PCNAP12004 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCNAP12004 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.67■□□□□ 0.58
PCNAP12004 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.66■□□□□ 0.58
PCNAP12004 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.66■□□□□ 0.58
PCNAP12004 NBPF21P-201ENST00000425093 1451 ntBASIC18.66■□□□□ 0.58
PCNAP12004 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PCNAP12004 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.66■□□□□ 0.58
PCNAP12004 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.66■□□□□ 0.58
PCNAP12004 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.66■□□□□ 0.58
PCNAP12004 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.66■□□□□ 0.58
PCNAP12004 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.66■□□□□ 0.58
PCNAP12004 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.66■□□□□ 0.58
PCNAP12004 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.66■□□□□ 0.58
PCNAP12004 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCNAP12004 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PCNAP12004 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PCNAP12004 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
PCNAP12004 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PCNAP12004 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.65■□□□□ 0.58
PCNAP12004 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.65■□□□□ 0.58
PCNAP12004 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.65■□□□□ 0.58
PCNAP12004 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.65■□□□□ 0.58
PCNAP12004 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.65■□□□□ 0.58
PCNAP12004 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.65■□□□□ 0.58
PCNAP12004 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.65■□□□□ 0.58
PCNAP12004 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 MTDHP1-201ENST00000605323 784 ntBASIC18.65■□□□□ 0.58
PCNAP12004 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
PCNAP12004 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCNAP12004 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms