Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH4O15457 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
MSH4O15457 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH4O15457 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH4O15457 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH4O15457 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH4O15457 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH4O15457 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.58■■□□□ 1.04
MSH4O15457 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
MSH4O15457 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.58■■□□□ 1.04
MSH4O15457 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
MSH4O15457 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH4O15457 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH4O15457 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH4O15457 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH4O15457 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH4O15457 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
MSH4O15457 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 AC116562.4-201ENST00000641316 2276 ntBASIC21.56■■□□□ 1.04
MSH4O15457 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.56■■□□□ 1.04
MSH4O15457 INGX-201ENST00000359239 846 ntBASIC21.56■■□□□ 1.04
MSH4O15457 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH4O15457 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH4O15457 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.56■■□□□ 1.04
MSH4O15457 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH4O15457 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
MSH4O15457 AC145285.6-201ENST00000604632 637 ntBASIC21.56■■□□□ 1.04
MSH4O15457 LINC01023-201ENST00000606054 436 ntBASIC21.56■■□□□ 1.04
MSH4O15457 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH4O15457 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH4O15457 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.55■■□□□ 1.04
MSH4O15457 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.55■■□□□ 1.04
MSH4O15457 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.55■■□□□ 1.04
MSH4O15457 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
MSH4O15457 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
MSH4O15457 TSPY14P-201ENST00000303979 915 ntBASIC21.55■■□□□ 1.04
MSH4O15457 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
MSH4O15457 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH4O15457 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH4O15457 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.55■■□□□ 1.04
MSH4O15457 C2orf69P3-201ENST00000565542 1120 ntBASIC21.55■■□□□ 1.04
MSH4O15457 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
MSH4O15457 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
MSH4O15457 LINC01568-207ENST00000641790 1380 ntBASIC21.55■■□□□ 1.04
MSH4O15457 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
MSH4O15457 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH4O15457 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH4O15457 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH4O15457 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.55■■□□□ 1.04
MSH4O15457 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH4O15457 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.54■■□□□ 1.04
MSH4O15457 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.54■■□□□ 1.04
MSH4O15457 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH4O15457 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
MSH4O15457 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.54■■□□□ 1.04
MSH4O15457 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH4O15457 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
MSH4O15457 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 AC005332.7-201ENST00000614046 2005 ntBASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms