Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 AL391807.1-203ENST00000604392 2365 ntBASIC14.93□□□□□ -0.02
COL6A5A8TX70 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.92□□□□□ -0.02
COL6A5A8TX70 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A5A8TX70 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 NSUN5P1-202ENST00000421140 1535 ntBASIC14.92□□□□□ -0.02
COL6A5A8TX70 NSUN5P2-203ENST00000457352 1529 ntBASIC14.92□□□□□ -0.02
COL6A5A8TX70 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A5A8TX70 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 HNRNPDP1-201ENST00000439535 754 ntBASIC14.91□□□□□ -0.02
COL6A5A8TX70 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 AP006288.1-201ENST00000446065 395 ntBASIC14.91□□□□□ -0.02
COL6A5A8TX70 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 MIR7706-201ENST00000613747 67 ntBASIC14.91□□□□□ -0.02
COL6A5A8TX70 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A5A8TX70 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A5A8TX70 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 KRT8P11-201ENST00000409686 1436 ntBASIC14.9□□□□□ -0.02
COL6A5A8TX70 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 SPCS2P1-201ENST00000561636 679 ntBASIC14.9□□□□□ -0.02
COL6A5A8TX70 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A5A8TX70 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 FAM197Y3-203ENST00000618346 717 ntBASIC14.9□□□□□ -0.02
COL6A5A8TX70 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A5A8TX70 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms