Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV40A0A0B4J280 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV40A0A0B4J280 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 AC007663.1-201ENST00000438948 1240 ntBASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 CKBP1-201ENST00000565489 1086 ntBASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 AC006011.2-201ENST00000621313 1158 ntBASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.62■□□□□ 0.09
TRAV40A0A0B4J280 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 PCDHAC2-203ENST00000615316 3011 ntBASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 TSPY17P-201ENST00000450329 467 ntBASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 PRSS44-201ENST00000515154 1146 ntBASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 AC010653.2-201ENST00000623505 997 ntBASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms