Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AL109923.1-201ENST00000618799 583 ntBASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV3A0A0B4J244 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AC007613.1-201ENST00000572811 2597 ntBASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TUBB8P6-201ENST00000436895 1288 ntBASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AC008687.6-201ENST00000596318 630 ntBASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AL121829.2-201ENST00000620908 328 ntBASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AC009113.1-201ENST00000570267 2443 ntBASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV3A0A0B4J244 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV3A0A0B4J244 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms