Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 MIR491-201ENST00000384877 84 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 SSXP10-201ENST00000402595 565 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 SFR1P1-201ENST00000403720 688 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 RPL19P1-201ENST00000411635 428 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AL353678.1-201ENST00000422735 741 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 MRPL50P4-201ENST00000446432 475 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC140076.1-201ENST00000449897 361 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC117440.1-201ENST00000474107 571 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC015724.1-201ENST00000478577 156 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC090525.1-201ENST00000479116 478 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC133963.2-201ENST00000513686 578 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 MIR3605-201ENST00000583214 100 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 MIR5195-201ENST00000583555 115 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AC113368.1-201ENST00000603736 382 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 AL162574.2-201ENST00000614618 657 ntBASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.84□□□□□ -1.95
USH1CQ9Y6N9 MAPK10-322ENST00000641485 4530 ntBASIC2.84□□□□□ -1.96
USH1CQ9Y6N9 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.84□□□□□ -1.96
USH1CQ9Y6N9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.96
USH1CQ9Y6N9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
USH1CQ9Y6N9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.84□□□□□ -1.96
USH1CQ9Y6N9 ZNF734P-201ENST00000419494 1534 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 RNU6-252P-201ENST00000363232 107 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 RNA5SP267-201ENST00000364893 126 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 RNU4-65P-201ENST00000410473 140 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 RNU4-47P-201ENST00000410876 114 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC008280.1-201ENST00000418851 412 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 MTND4P24-201ENST00000424002 397 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC097713.2-201ENST00000430199 356 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 ST13P20-201ENST00000447996 1065 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC017015.1-201ENST00000477387 286 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC026427.2-201ENST00000506228 536 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC004062.1-201ENST00000509926 645 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 SNORD59.2-201ENST00000516873 68 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AL133271.1-201ENST00000538229 291 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC092470.1-201ENST00000546187 132 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC015871.2-201ENST00000603605 948 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AC092608.3-201ENST00000625017 386 ntBASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USH1CQ9Y6N9 AP003122.5-201ENST00000527668 3766 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 RNU6-1339P-201ENST00000363574 91 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 SNORD21-201ENST00000383953 95 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 SNORA9-201ENST00000384215 133 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 SNORA54-201ENST00000384281 123 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 RNU6-1226P-201ENST00000384317 107 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 U3.19-201ENST00000390893 196 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AL512633.1-201ENST00000399931 655 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 OFD1P18Y-201ENST00000420889 959 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 RFESDP1-201ENST00000422350 461 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AC073310.1-201ENST00000423226 1033 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 HSFY1P1-201ENST00000423928 1178 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AC005189.1-201ENST00000431286 310 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AC114878.1-201ENST00000441166 358 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 DNAJC19P8-201ENST00000452887 259 ntBASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
USH1CQ9Y6N9 AC093663.2-201ENST00000484625 313 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms