Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.11□□□□□ -1.91
SHHQ15465 SNORA50A-202ENST00000629536 136 ntBASIC3.11□□□□□ -1.91
SHHQ15465 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.11□□□□□ -1.91
SHHQ15465 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHHQ15465 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SHHQ15465 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SHHQ15465 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SHHQ15465 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHHQ15465 MIR9-1-201ENST00000385198 89 ntBASIC3.1□□□□□ -1.91
SHHQ15465 CYCSP45-201ENST00000402289 315 ntBASIC3.1□□□□□ -1.91
SHHQ15465 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.1□□□□□ -1.91
SHHQ15465 NEK4P1-201ENST00000433383 879 ntBASIC3.1□□□□□ -1.91
SHHQ15465 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.1□□□□□ -1.91
SHHQ15465 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.1□□□□□ -1.91
SHHQ15465 HMGN1P5-201ENST00000448591 263 ntBASIC3.1□□□□□ -1.91
SHHQ15465 RPL23AP23-201ENST00000452590 471 ntBASIC3.1□□□□□ -1.91
SHHQ15465 AC108729.2-201ENST00000476543 840 ntBASIC3.1□□□□□ -1.91
SHHQ15465 RN7SL20P-201ENST00000488827 297 ntBASIC3.1□□□□□ -1.91
SHHQ15465 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SHHQ15465 AC078918.1-201ENST00000498515 228 ntBASIC3.1□□□□□ -1.91
SHHQ15465 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SHHQ15465 TMEM248P1-201ENST00000510579 951 ntBASIC3.1□□□□□ -1.91
SHHQ15465 ARL2BPP6-201ENST00000512757 439 ntBASIC3.1□□□□□ -1.91
SHHQ15465 MTCO1P30-201ENST00000515244 580 ntBASIC3.1□□□□□ -1.91
SHHQ15465 RNU4-60P-201ENST00000517239 135 ntBASIC3.1□□□□□ -1.91
SHHQ15465 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.1□□□□□ -1.91
SHHQ15465 AC098483.2-201ENST00000603158 454 ntBASIC3.1□□□□□ -1.91
SHHQ15465 OR4H6P-202ENST00000603819 340 ntBASIC3.1□□□□□ -1.91
SHHQ15465 AL450270.1-201ENST00000606160 391 ntBASIC3.1□□□□□ -1.91
SHHQ15465 AC011374.2-201ENST00000607135 526 ntBASIC3.1□□□□□ -1.91
SHHQ15465 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.1□□□□□ -1.91
SHHQ15465 AL356490.1-201ENST00000623079 479 ntBASIC3.1□□□□□ -1.91
SHHQ15465 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.1□□□□□ -1.91
SHHQ15465 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.1□□□□□ -1.91
SHHQ15465 MIR7153-201ENST00000637758 57 ntBASIC3.1□□□□□ -1.91
SHHQ15465 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SHHQ15465 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
SHHQ15465 AL512283.1-201ENST00000606756 1384 ntBASIC3.1□□□□□ -1.91
SHHQ15465 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHHQ15465 MTND5P3-201ENST00000438536 1800 ntBASIC3.09□□□□□ -1.91
SHHQ15465 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SHHQ15465 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SHHQ15465 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SHHQ15465 Y_RNA.238-201ENST00000364441 102 ntBASIC3.09□□□□□ -1.91
SHHQ15465 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SHHQ15465 AL138827.1-201ENST00000402666 306 ntBASIC3.09□□□□□ -1.91
SHHQ15465 NUP35P2-201ENST00000416748 943 ntBASIC3.09□□□□□ -1.91
SHHQ15465 LINC01347-201ENST00000417964 355 ntBASIC3.09□□□□□ -1.91
SHHQ15465 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.09□□□□□ -1.91
SHHQ15465 AL354692.1-201ENST00000423044 315 ntBASIC3.09□□□□□ -1.91
SHHQ15465 DUTP6-201ENST00000425573 462 ntBASIC3.09□□□□□ -1.91
SHHQ15465 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.09□□□□□ -1.91
SHHQ15465 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.09□□□□□ -1.91
SHHQ15465 AC005189.1-201ENST00000431286 310 ntBASIC3.09□□□□□ -1.91
SHHQ15465 B3GNT2P1-201ENST00000434960 952 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC092685.1-201ENST00000447960 1243 ntBASIC3.09□□□□□ -1.91
SHHQ15465 MTND5P8-201ENST00000449817 1083 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC104689.1-201ENST00000473356 768 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC021205.2-201ENST00000480069 347 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.09□□□□□ -1.91
SHHQ15465 AC092902.1-201ENST00000486999 259 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.09□□□□□ -1.91
SHHQ15465 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.09□□□□□ -1.91
SHHQ15465 RNU6-1102P-201ENST00000516149 96 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.09□□□□□ -1.91
SHHQ15465 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.09□□□□□ -1.91
SHHQ15465 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.09□□□□□ -1.91
SHHQ15465 AP003049.1-201ENST00000529418 457 ntBASIC3.09□□□□□ -1.91
SHHQ15465 OR8L1P-201ENST00000534005 955 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.09□□□□□ -1.91
SHHQ15465 AC027176.1-201ENST00000560204 514 ntBASIC3.09□□□□□ -1.91
SHHQ15465 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.09□□□□□ -1.91
SHHQ15465 SUMO2P14-201ENST00000604488 293 ntBASIC3.09□□□□□ -1.91
SHHQ15465 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.09□□□□□ -1.91
SHHQ15465 AC092608.2-201ENST00000624427 218 ntBASIC3.09□□□□□ -1.91
SHHQ15465 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SHHQ15465 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.09□□□□□ -1.91
SHHQ15465 GABPAP-201ENST00000419271 1356 ntBASIC3.09□□□□□ -1.92
SHHQ15465 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SHHQ15465 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHHQ15465 MIR764-201ENST00000390811 85 ntBASIC3.08□□□□□ -1.92
SHHQ15465 DNAJC19P6-201ENST00000401853 280 ntBASIC3.08□□□□□ -1.92
SHHQ15465 HMGB1P13-201ENST00000406019 642 ntBASIC3.08□□□□□ -1.92
SHHQ15465 RNU2-21P-201ENST00000410368 188 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC3.08□□□□□ -1.92
SHHQ15465 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.08□□□□□ -1.92
SHHQ15465 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.08□□□□□ -1.92
SHHQ15465 AC073310.1-201ENST00000423226 1033 ntBASIC3.08□□□□□ -1.92
SHHQ15465 MTCO2P1-201ENST00000424648 477 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.08□□□□□ -1.92
SHHQ15465 AC025181.1-201ENST00000477507 416 ntBASIC3.08□□□□□ -1.92
SHHQ15465 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.08□□□□□ -1.92
SHHQ15465 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.08□□□□□ -1.92
SHHQ15465 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.08□□□□□ -1.92
SHHQ15465 RNU2-58P-201ENST00000516403 183 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AP003122.3-201ENST00000526316 255 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AC090751.1-201ENST00000566966 267 ntBASIC3.08□□□□□ -1.92
SHHQ15465 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.08□□□□□ -1.92
SHHQ15465 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.08□□□□□ -1.92
SHHQ15465 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms