Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.48□□□□□ -1.85
PTPN4P29074 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.48□□□□□ -1.85
PTPN4P29074 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
PTPN4P29074 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN4P29074 AL390838.2-201ENST00000602394 274 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 AC069431.2-201ENST00000604149 1099 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 AC112220.2-201ENST00000605513 533 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 AC107294.3-201ENST00000609211 526 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 AC073968.1-201ENST00000618594 637 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 AC010608.3-201ENST00000625048 527 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN4P29074 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.48□□□□□ -1.85
PTPN4P29074 AC119674.1-207ENST00000641355 633 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.48□□□□□ -1.85
PTPN4P29074 AC004972.1-201ENST00000623934 2209 ntBASIC3.48□□□□□ -1.85
PTPN4P29074 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.48□□□□□ -1.85
PTPN4P29074 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 MTND5P27-201ENST00000428871 1720 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 AC073346.2-201ENST00000624724 2058 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
PTPN4P29074 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
PTPN4P29074 RNU6-821P-201ENST00000390995 107 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 RNU6-1300P-201ENST00000391046 108 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 SOD2P1-201ENST00000396543 562 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 HMGB3P23-201ENST00000414981 585 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.47□□□□□ -1.85
PTPN4P29074 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 SDCBPP2-201ENST00000424643 885 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AL159987.2-201ENST00000432754 307 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AC073063.1-201ENST00000434352 607 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 PRELID3BP6-201ENST00000503839 571 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 KCTD9P5-201ENST00000504141 1170 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.47□□□□□ -1.85
PTPN4P29074 SNORA19.3-201ENST00000516165 130 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 SNORA70.19-201ENST00000516717 90 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.47□□□□□ -1.85
PTPN4P29074 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 SNORD39.3-201ENST00000584451 71 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AC091057.3-201ENST00000602684 733 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AC006077.1-201ENST00000604746 343 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AL121652.1-201ENST00000608851 448 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN4P29074 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AC099654.9-201ENST00000637055 678 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 MTND2P41-201ENST00000637599 773 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 AL392088.2-201ENST00000637607 285 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.47□□□□□ -1.85
PTPN4P29074 MTND5P1-201ENST00000445440 1375 ntBASIC3.47□□□□□ -1.85
PTPN4P29074 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.47□□□□□ -1.85
PTPN4P29074 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.47□□□□□ -1.85
PTPN4P29074 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN4P29074 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
PTPN4P29074 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.47□□□□□ -1.85
PTPN4P29074 GDI2P1-201ENST00000429312 1336 ntBASIC3.46□□□□□ -1.85
PTPN4P29074 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.46□□□□□ -1.85
PTPN4P29074 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.46□□□□□ -1.86
PTPN4P29074 RNA5SP258-201ENST00000362750 119 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 RNU6-1249P-201ENST00000363237 111 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 SNORD56.3-201ENST00000363507 71 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
PTPN4P29074 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
PTPN4P29074 RNU6-224P-201ENST00000384055 107 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 SNORA9-201ENST00000384215 133 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 MIR506-201ENST00000384998 124 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 MIR483-201ENST00000385070 76 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 RPL17P50-201ENST00000396131 546 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 AL024474.1-201ENST00000404655 591 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 MTCO3P1-205ENST00000422088 832 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.46□□□□□ -1.86
PTPN4P29074 CYCSP4-201ENST00000429682 331 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 ISCA1P2-201ENST00000438679 421 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 MTCYBP31-201ENST00000438855 1122 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.46□□□□□ -1.86
PTPN4P29074 AC092641.1-201ENST00000440229 772 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 NECAP1P2-201ENST00000455668 727 ntBASIC3.46□□□□□ -1.86
PTPN4P29074 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms