Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.72□□□□□ -1.81
MSH3P20585 USP9YP7-201ENST00000436723 430 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC006480.1-201ENST00000449887 378 ntBASIC3.72□□□□□ -1.81
MSH3P20585 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.72□□□□□ -1.81
MSH3P20585 USP9YP32-201ENST00000452432 430 ntBASIC3.72□□□□□ -1.81
MSH3P20585 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.72□□□□□ -1.81
MSH3P20585 MTCO3P16-201ENST00000454456 754 ntBASIC3.72□□□□□ -1.81
MSH3P20585 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.72□□□□□ -1.81
MSH3P20585 RPL21P103-201ENST00000479921 488 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC082651.2-201ENST00000496833 166 ntBASIC3.72□□□□□ -1.81
MSH3P20585 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSH3P20585 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.72□□□□□ -1.81
MSH3P20585 RN7SKP277-201ENST00000516895 283 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.72□□□□□ -1.81
MSH3P20585 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.72□□□□□ -1.81
MSH3P20585 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.72□□□□□ -1.81
MSH3P20585 OR7K1P-201ENST00000546439 926 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.72□□□□□ -1.81
MSH3P20585 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSH3P20585 AC006960.3-201ENST00000561845 705 ntBASIC3.72□□□□□ -1.81
MSH3P20585 MIR4504-201ENST00000577413 92 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC011260.1-201ENST00000578420 472 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC020914.6-201ENST00000594327 272 ntBASIC3.72□□□□□ -1.81
MSH3P20585 BRDTP1-201ENST00000605735 677 ntBASIC3.72□□□□□ -1.81
MSH3P20585 OR2AS2P-201ENST00000606902 342 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AC091965.5-201ENST00000624785 342 ntBASIC3.72□□□□□ -1.81
MSH3P20585 PCMTD1P7-201ENST00000634506 357 ntBASIC3.72□□□□□ -1.81
MSH3P20585 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.72□□□□□ -1.81
MSH3P20585 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSH3P20585 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSH3P20585 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.72□□□□□ -1.81
MSH3P20585 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSH3P20585 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
MSH3P20585 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSH3P20585 MTND5P28-201ENST00000438005 1594 ntBASIC3.72□□□□□ -1.81
MSH3P20585 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
MSH3P20585 RPS4XP5-202ENST00000449995 1334 ntBASIC3.71□□□□□ -1.81
MSH3P20585 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.71□□□□□ -1.81
MSH3P20585 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.71□□□□□ -1.81
MSH3P20585 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH3P20585 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSH3P20585 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSH3P20585 RNU6-1243P-201ENST00000364028 107 ntBASIC3.71□□□□□ -1.82
MSH3P20585 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH3P20585 SNORA70E-201ENST00000384492 135 ntBASIC3.71□□□□□ -1.82
MSH3P20585 Y_RNA.560-201ENST00000384689 102 ntBASIC3.71□□□□□ -1.82
MSH3P20585 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
MSH3P20585 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH3P20585 SEPT2P1-201ENST00000419651 180 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AL159169.1-201ENST00000421119 127 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AC092832.1-201ENST00000422934 400 ntBASIC3.71□□□□□ -1.82
MSH3P20585 BX119904.4-201ENST00000424402 301 ntBASIC3.71□□□□□ -1.82
MSH3P20585 VN1R108P-201ENST00000431580 830 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AL590103.1-201ENST00000434488 307 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH3P20585 AC092427.1-201ENST00000439177 601 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH3P20585 RPL23AP16-201ENST00000441715 421 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH3P20585 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH3P20585 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
MSH3P20585 RPL23AP35-201ENST00000451906 501 ntBASIC3.71□□□□□ -1.82
MSH3P20585 USP9YP10-201ENST00000454868 628 ntBASIC3.71□□□□□ -1.82
MSH3P20585 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH3P20585 AC092754.2-201ENST00000463506 460 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AC005726.1-201ENST00000494679 427 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AC012170.1-201ENST00000495139 359 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH3P20585 SNX5P1-201ENST00000505757 1041 ntBASIC3.71□□□□□ -1.82
MSH3P20585 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH3P20585 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH3P20585 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH3P20585 AC117532.1-201ENST00000514638 323 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH3P20585 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.71□□□□□ -1.82
MSH3P20585 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.71□□□□□ -1.82
MSH3P20585 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH3P20585 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
MSH3P20585 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH3P20585 WISP1-OT1-201ENST00000602893 642 ntBASIC3.71□□□□□ -1.82
MSH3P20585 LLPHP1-201ENST00000603571 367 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AL049634.3-201ENST00000604968 457 ntBASIC3.71□□□□□ -1.82
MSH3P20585 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH3P20585 AC024560.3-201ENST00000608482 349 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AL031667.3-201ENST00000620124 655 ntBASIC3.71□□□□□ -1.82
MSH3P20585 AC007494.3-201ENST00000624660 743 ntBASIC3.71□□□□□ -1.82
MSH3P20585 NMD3P1-201ENST00000439704 1488 ntBASIC3.71□□□□□ -1.82
MSH3P20585 TNPO1P3-201ENST00000436471 2662 ntBASIC3.71□□□□□ -1.82
MSH3P20585 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSH3P20585 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH3P20585 AC021755.1-201ENST00000559747 1447 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 AC006504.1-201ENST00000562493 3666 ntBASIC3.7□□□□□ -1.82
MSH3P20585 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSH3P20585 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSH3P20585 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 AC025750.1-201ENST00000399891 379 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms