Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC9.74□□□□□ -0.85
MSH5O43196 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC9.74□□□□□ -0.85
MSH5O43196 DPY19L2P2-203ENST00000435536 1858 ntBASIC9.74□□□□□ -0.85
MSH5O43196 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
MSH5O43196 GNL2P1-201ENST00000451274 2190 ntBASIC9.74□□□□□ -0.85
MSH5O43196 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC9.73□□□□□ -0.85
MSH5O43196 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
MSH5O43196 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
MSH5O43196 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
MSH5O43196 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 AC022336.2-201ENST00000568966 2538 ntBASIC9.73□□□□□ -0.85
MSH5O43196 RNU6-336P-201ENST00000364891 107 ntBASIC9.73□□□□□ -0.85
MSH5O43196 RNU6-402P-201ENST00000410678 103 ntBASIC9.73□□□□□ -0.85
MSH5O43196 RPL12P46-201ENST00000436610 195 ntBASIC9.73□□□□□ -0.85
MSH5O43196 RPL12P49-201ENST00000441100 121 ntBASIC9.73□□□□□ -0.85
MSH5O43196 RN7SL251P-201ENST00000464175 297 ntBASIC9.73□□□□□ -0.85
MSH5O43196 AC104164.2-201ENST00000496953 495 ntBASIC9.73□□□□□ -0.85
MSH5O43196 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC9.73□□□□□ -0.85
MSH5O43196 RNU6-377P-201ENST00000515965 102 ntBASIC9.73□□□□□ -0.85
MSH5O43196 RN7SKP98-201ENST00000517070 156 ntBASIC9.73□□□□□ -0.85
MSH5O43196 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC9.73□□□□□ -0.85
MSH5O43196 RN7SL426P-201ENST00000579106 295 ntBASIC9.73□□□□□ -0.85
MSH5O43196 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
MSH5O43196 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
MSH5O43196 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC9.73□□□□□ -0.85
MSH5O43196 AL136981.1-203ENST00000451452 3844 ntBASIC9.73□□□□□ -0.85
MSH5O43196 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
MSH5O43196 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC9.73□□□□□ -0.85
MSH5O43196 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
MSH5O43196 AL161891.1-201ENST00000621575 4636 ntBASIC9.73□□□□□ -0.85
MSH5O43196 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC9.73□□□□□ -0.85
MSH5O43196 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC9.73□□□□□ -0.85
MSH5O43196 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC9.72□□□□□ -0.85
MSH5O43196 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC9.72□□□□□ -0.85
MSH5O43196 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
MSH5O43196 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 OR8B9P-202ENST00000642028 5216 ntBASIC9.72□□□□□ -0.85
MSH5O43196 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 SNORA70I-201ENST00000384544 135 ntBASIC9.72□□□□□ -0.85
MSH5O43196 MIR498-201ENST00000385134 124 ntBASIC9.72□□□□□ -0.85
MSH5O43196 EIF4EBP2P3-201ENST00000403144 334 ntBASIC9.72□□□□□ -0.85
MSH5O43196 U3.40-201ENST00000408706 208 ntBASIC9.72□□□□□ -0.85
MSH5O43196 RNA5SP136-201ENST00000410906 107 ntBASIC9.72□□□□□ -0.85
MSH5O43196 Z82198.3-201ENST00000421145 199 ntBASIC9.72□□□□□ -0.85
MSH5O43196 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC9.72□□□□□ -0.85
MSH5O43196 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC9.72□□□□□ -0.85
MSH5O43196 AC107626.1-201ENST00000471084 183 ntBASIC9.72□□□□□ -0.85
MSH5O43196 AC093664.1-201ENST00000511779 289 ntBASIC9.72□□□□□ -0.85
MSH5O43196 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC9.72□□□□□ -0.85
MSH5O43196 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
MSH5O43196 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 AC017071.1-201ENST00000564407 2204 ntBASIC9.72□□□□□ -0.85
MSH5O43196 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC9.72□□□□□ -0.85
MSH5O43196 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
MSH5O43196 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC9.71□□□□□ -0.85
MSH5O43196 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 GUCY2F-201ENST00000218006 3714 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
MSH5O43196 U8.10-201ENST00000384260 133 ntBASIC9.71□□□□□ -0.86
MSH5O43196 AC074117.2-201ENST00000417130 397 ntBASIC9.71□□□□□ -0.86
MSH5O43196 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC9.71□□□□□ -0.86
MSH5O43196 GSTM5P1-201ENST00000434751 660 ntBASIC9.71□□□□□ -0.86
MSH5O43196 AL772161.1-201ENST00000439130 476 ntBASIC9.71□□□□□ -0.86
MSH5O43196 AC005517.1-201ENST00000452091 489 ntBASIC9.71□□□□□ -0.86
MSH5O43196 PTMAP1-205ENST00000455552 325 ntBASIC9.71□□□□□ -0.86
MSH5O43196 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC9.71□□□□□ -0.86
MSH5O43196 AC006380.1-201ENST00000603598 186 ntBASIC9.71□□□□□ -0.86
MSH5O43196 MAPK10-371ENST00000641952 5209 ntBASIC9.71□□□□□ -0.86
MSH5O43196 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC9.71□□□□□ -0.86
MSH5O43196 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC9.71□□□□□ -0.86
MSH5O43196 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC9.71□□□□□ -0.86
MSH5O43196 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.86
MSH5O43196 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms