Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC092851.1-201ENST00000535964 478 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC011492.1-201ENST00000600023 315 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 RNU6-1231P-201ENST00000517185 103 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 ARL2BPP2-201ENST00000550907 489 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AL356266.1-201ENST00000623311 483 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RNA5SP210-201ENST00000391034 120 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RNU4-62P-201ENST00000410125 130 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 NDUFB4P6-201ENST00000436819 366 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RPL23AP76-201ENST00000441860 458 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RPL5P13-201ENST00000462840 709 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 SCARNA16.3-201ENST00000516595 184 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 MIR219B-201ENST00000637023 88 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RNU2-68P-201ENST00000410878 191 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RPS20P25-201ENST00000412447 352 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 SNORA4-201ENST00000584302 138 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 WISP1-OT1-201ENST00000602893 642 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AL353684.1-201ENST00000622677 1120 ntBASIC2.16□□□□□ -2.06
VPS13AQ96RL7 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS13AQ96RL7 Y_RNA.295-201ENST00000364918 102 ntBASIC2.15□□□□□ -2.06
VPS13AQ96RL7 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13AQ96RL7 MTATP6P11-201ENST00000428071 670 ntBASIC2.15□□□□□ -2.06
VPS13AQ96RL7 RAC1P5-201ENST00000512182 576 ntBASIC2.15□□□□□ -2.06
VPS13AQ96RL7 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.15□□□□□ -2.06
VPS13AQ96RL7 MIR5092-201ENST00000583139 88 ntBASIC2.15□□□□□ -2.06
VPS13AQ96RL7 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.15□□□□□ -2.06
VPS13AQ96RL7 AC108479.2-201ENST00000617314 601 ntBASIC2.15□□□□□ -2.06
VPS13AQ96RL7 AC091046.2-201ENST00000620775 665 ntBASIC2.15□□□□□ -2.06
VPS13AQ96RL7 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.15□□□□□ -2.06
VPS13AQ96RL7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13AQ96RL7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
VPS13AQ96RL7 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 RAC1P3-201ENST00000416129 580 ntBASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 Z73417.1-201ENST00000447373 778 ntBASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AC002553.2-201ENST00000453217 340 ntBASIC2.15□□□□□ -2.07
VPS13AQ96RL7 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 CREM-226ENST00000469949 721 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13AQ96RL7 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 RN7SKP247-201ENST00000411094 308 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 ATG3P1-201ENST00000419507 911 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 RPS15AP6-201ENST00000420703 385 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 snoZ278.1-201ENST00000517059 112 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AC011978.2-201ENST00000569835 2054 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AC009237.2-201ENST00000421358 284 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AL118520.1-201ENST00000450770 291 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 RNA5SP200-201ENST00000516360 103 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 HMGB1P10-201ENST00000395823 563 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS13AQ96RL7 RNA5SP296-201ENST00000410523 111 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 AC017007.3-201ENST00000479865 435 ntBASIC2.14□□□□□ -2.07
VPS13AQ96RL7 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms