Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC022432.1-201ENST00000595739 310 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 YWHAQP7-201ENST00000603536 658 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AL391646.1-201ENST00000603860 190 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 RNU6-87P-201ENST00000607561 108 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC084757.4-201ENST00000616350 526 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 MIR8069-1-201ENST00000616627 86 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.46□□□□□ -1.7
COL4A3Q01955 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.46□□□□□ -1.7
COL4A3Q01955 MIR8059-201ENST00000620427 81 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AC002550.2-201ENST00000621246 394 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 MIR8069-2-201ENST00000621412 86 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL4A3Q01955 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC004656.1-201ENST00000568479 4951 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.46□□□□□ -1.7
COL4A3Q01955 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A3Q01955 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A3Q01955 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.46□□□□□ -1.7
COL4A3Q01955 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A3Q01955 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC104260.2-201ENST00000623551 3497 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
COL4A3Q01955 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC4.45□□□□□ -1.7
COL4A3Q01955 RNA5SP307-201ENST00000362863 116 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU6-767P-201ENST00000384132 107 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU6-332P-201ENST00000391193 108 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 RN7SKP266-201ENST00000410232 287 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AL359704.1-201ENST00000411586 781 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 SNRPEP10-201ENST00000420249 274 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 EIF1P3-201ENST00000423841 334 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RPL37P1-201ENST00000432310 284 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 KCTD9P3-201ENST00000434597 1169 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 NDUFA5P4-201ENST00000436704 385 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.45□□□□□ -1.7
COL4A3Q01955 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 TRGVB-201ENST00000453257 471 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 MTND1P12-201ENST00000455231 147 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC079804.1-201ENST00000461922 436 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU6-1003P-201ENST00000517099 105 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A3Q01955 IGKV2-36-201ENST00000519999 223 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC007424.1-203ENST00000554613 687 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 MIR3200-201ENST00000580767 85 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RN7SL435P-201ENST00000584418 282 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC010928.3-201ENST00000587712 541 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC005498.1-201ENST00000592125 465 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AL050343.2-201ENST00000607338 280 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC093788.1-201ENST00000609356 927 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC015908.5-201ENST00000623289 343 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A3Q01955 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
COL4A3Q01955 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A3Q01955 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.45□□□□□ -1.7
COL4A3Q01955 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A3Q01955 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC097461.1-201ENST00000568928 2821 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 GNG5P1-201ENST00000255500 204 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU1-14P-201ENST00000362759 152 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 Y_RNA.72-201ENST00000362894 103 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU1-83P-201ENST00000363426 164 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 PTMAP2-201ENST00000397627 327 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU2-28P-201ENST00000410457 189 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 RNU2-8P-201ENST00000410727 190 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 MTND3P17-201ENST00000416968 344 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AL691449.1-201ENST00000426570 421 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 OR4F13P-201ENST00000428478 931 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 GTF2IP20-201ENST00000431663 360 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC023347.2-201ENST00000433994 462 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 TBCAP1-201ENST00000436520 327 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms