Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.58□□□□□ -2
FOXA1P55317 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.58□□□□□ -2
FOXA1P55317 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 COX6CP2-201ENST00000444980 225 ntBASIC2.58□□□□□ -2
FOXA1P55317 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 SNORA59A-201ENST00000459326 152 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.58□□□□□ -2
FOXA1P55317 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 AC005351.1-201ENST00000511152 786 ntBASIC2.58□□□□□ -2
FOXA1P55317 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 AC100870.1-201ENST00000522035 505 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC007536.1-201ENST00000533382 349 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC139103.1-201ENST00000534696 1030 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC022080.3-201ENST00000544433 482 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC123904.3-201ENST00000547218 814 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC2.58□□□□□ -2
FOXA1P55317 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.58□□□□□ -2
FOXA1P55317 CENPUP2-201ENST00000555897 1186 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 AL157394.1-201ENST00000562983 1224 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC034268.2-201ENST00000571784 482 ntBASIC2.58□□□□□ -2
FOXA1P55317 MIR4325-201ENST00000583049 90 ntBASIC2.58□□□□□ -2
FOXA1P55317 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC083865.1-201ENST00000636634 831 ntBASIC2.58□□□□□ -2
FOXA1P55317 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.58□□□□□ -2
FOXA1P55317 MTND4P21-201ENST00000453886 1357 ntBASIC2.58□□□□□ -2
FOXA1P55317 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
FOXA1P55317 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.57□□□□□ -2
FOXA1P55317 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
FOXA1P55317 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 ZNF807-201ENST00000328088 1707 ntBASIC2.57□□□□□ -2
FOXA1P55317 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.57□□□□□ -2
FOXA1P55317 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.57□□□□□ -2
FOXA1P55317 RNU1-140P-201ENST00000365040 165 ntBASIC2.57□□□□□ -2
FOXA1P55317 RNU6-1005P-201ENST00000384519 107 ntBASIC2.57□□□□□ -2
FOXA1P55317 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 UBE2V1P15-201ENST00000407776 448 ntBASIC2.57□□□□□ -2
FOXA1P55317 SNORA11.2-201ENST00000408318 127 ntBASIC2.57□□□□□ -2
FOXA1P55317 TATDN1P1-201ENST00000414123 891 ntBASIC2.57□□□□□ -2
FOXA1P55317 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.57□□□□□ -2
FOXA1P55317 RPL7P44-201ENST00000424827 742 ntBASIC2.57□□□□□ -2
FOXA1P55317 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.57□□□□□ -2
FOXA1P55317 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 RPL7P59-201ENST00000447700 943 ntBASIC2.57□□□□□ -2
FOXA1P55317 AC140076.1-201ENST00000449897 361 ntBASIC2.57□□□□□ -2
FOXA1P55317 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 AC133134.1-201ENST00000466800 359 ntBASIC2.57□□□□□ -2
FOXA1P55317 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA1P55317 AC012181.1-201ENST00000479895 423 ntBASIC2.57□□□□□ -2
FOXA1P55317 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 RPL7L1P13-201ENST00000511702 739 ntBASIC2.57□□□□□ -2
FOXA1P55317 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.57□□□□□ -2
FOXA1P55317 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.57□□□□□ -2
FOXA1P55317 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.57□□□□□ -2
FOXA1P55317 AC112503.1-201ENST00000608436 391 ntBASIC2.57□□□□□ -2
FOXA1P55317 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA1P55317 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA1P55317 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
FOXA1P55317 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA1P55317 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.56□□□□□ -2
FOXA1P55317 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.56□□□□□ -2
FOXA1P55317 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.56□□□□□ -2
FOXA1P55317 AL589826.1-201ENST00000340697 249 ntBASIC2.56□□□□□ -2
FOXA1P55317 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA1P55317 RNU6-543P-201ENST00000362576 108 ntBASIC2.56□□□□□ -2
FOXA1P55317 U8.9-201ENST00000365667 134 ntBASIC2.56□□□□□ -2
FOXA1P55317 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.56□□□□□ -2
FOXA1P55317 RNU6-1293P-201ENST00000384077 107 ntBASIC2.56□□□□□ -2
FOXA1P55317 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA1P55317 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.56□□□□□ -2
FOXA1P55317 AL645937.1-202ENST00000421799 937 ntBASIC2.56□□□□□ -2
FOXA1P55317 PNRC2P1-201ENST00000423940 420 ntBASIC2.56□□□□□ -2
FOXA1P55317 AC005189.1-201ENST00000431286 310 ntBASIC2.56□□□□□ -2
FOXA1P55317 PTP4A1P3-201ENST00000433661 420 ntBASIC2.56□□□□□ -2
FOXA1P55317 AC104308.1-201ENST00000454621 333 ntBASIC2.56□□□□□ -2
FOXA1P55317 S100A11P2-201ENST00000467589 312 ntBASIC2.56□□□□□ -2
FOXA1P55317 AC104689.1-201ENST00000473356 768 ntBASIC2.56□□□□□ -2
FOXA1P55317 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.56□□□□□ -2
FOXA1P55317 RN7SKP282-201ENST00000516824 299 ntBASIC2.56□□□□□ -2
FOXA1P55317 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC2.56□□□□□ -2
FOXA1P55317 OR7K1P-201ENST00000546439 926 ntBASIC2.56□□□□□ -2
FOXA1P55317 CR383656.14-201ENST00000551951 406 ntBASIC2.56□□□□□ -2
FOXA1P55317 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.56□□□□□ -2
FOXA1P55317 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.56□□□□□ -2
FOXA1P55317 AP001033.2-201ENST00000609701 1003 ntBASIC2.56□□□□□ -2
FOXA1P55317 BX664608.1-201ENST00000610519 487 ntBASIC2.56□□□□□ -2
FOXA1P55317 AL354696.1-201ENST00000614652 497 ntBASIC2.56□□□□□ -2
FOXA1P55317 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.56□□□□□ -2
FOXA1P55317 RNU6-156P-201ENST00000621869 107 ntBASIC2.56□□□□□ -2
FOXA1P55317 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms