Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC105429.2-201ENST00000610567 517 ntBASIC3.06□□□□□ -1.92
CDX2Q99626 U6.48-201ENST00000618523 106 ntBASIC3.06□□□□□ -1.92
CDX2Q99626 U7.8-201ENST00000619968 63 ntBASIC3.06□□□□□ -1.92
CDX2Q99626 PLCE1P1-201ENST00000622094 305 ntBASIC3.06□□□□□ -1.92
CDX2Q99626 AC091903.1-201ENST00000624322 454 ntBASIC3.06□□□□□ -1.92
CDX2Q99626 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX2Q99626 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX2Q99626 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
CDX2Q99626 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CDX2Q99626 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
CDX2Q99626 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.05□□□□□ -1.92
CDX2Q99626 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CDX2Q99626 RNU1-112P-201ENST00000364401 164 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.05□□□□□ -1.92
CDX2Q99626 MTCO3P31-201ENST00000405526 789 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.05□□□□□ -1.92
CDX2Q99626 AC009963.1-201ENST00000417265 157 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CDX2Q99626 MTCYBP31-201ENST00000438855 1122 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 AC097499.1-201ENST00000444277 208 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CDX2Q99626 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.05□□□□□ -1.92
CDX2Q99626 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.05□□□□□ -1.92
CDX2Q99626 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.05□□□□□ -1.92
CDX2Q99626 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.05□□□□□ -1.92
CDX2Q99626 CIR1P1-201ENST00000524055 1133 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CDX2Q99626 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.05□□□□□ -1.92
CDX2Q99626 AL442163.2-201ENST00000553912 710 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 AC027176.1-201ENST00000560204 514 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 AC233266.2-201ENST00000567067 528 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.05□□□□□ -1.92
CDX2Q99626 AC015871.2-201ENST00000603605 948 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 Z82195.1-201ENST00000604558 398 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 AC025034.2-201ENST00000623264 286 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.05□□□□□ -1.92
CDX2Q99626 AC048347.1-201ENST00000624621 427 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
CDX2Q99626 AC091564.4-201ENST00000533934 2194 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 AC091152.2-201ENST00000591628 2569 ntBASIC3.05□□□□□ -1.92
CDX2Q99626 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.04□□□□□ -1.92
CDX2Q99626 RAD1P1-201ENST00000231383 813 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AL589826.1-201ENST00000340697 249 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CDX2Q99626 ATF1P1-201ENST00000406040 927 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 MTND3P20-201ENST00000407663 186 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 VTA1P1-201ENST00000414044 866 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AL158825.1-201ENST00000414735 521 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC023128.2-201ENST00000420880 1223 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 BTBD7P2-201ENST00000441962 620 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.04□□□□□ -1.92
CDX2Q99626 NIPA2P5-201ENST00000452282 464 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AP001025.2-201ENST00000490908 477 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 OR5H5P-201ENST00000503164 928 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC092436.1-201ENST00000506450 503 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 MTATP6P22-201ENST00000507369 598 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 KLHL2P1-201ENST00000508691 521 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC005921.1-201ENST00000510589 286 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.04□□□□□ -1.92
CDX2Q99626 AC008494.2-201ENST00000514544 370 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.04□□□□□ -1.92
CDX2Q99626 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.04□□□□□ -1.92
CDX2Q99626 PDCL2P2-201ENST00000533651 189 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.04□□□□□ -1.92
CDX2Q99626 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.04□□□□□ -1.92
CDX2Q99626 AC078899.3-201ENST00000599065 212 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC007566.2-201ENST00000603642 413 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 RNA5SP108-201ENST00000605921 117 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AP001033.2-201ENST00000609701 1003 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AL353997.5-201ENST00000618886 171 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 AC006065.5-201ENST00000623427 349 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CDX2Q99626 AL118508.4-201ENST00000624142 1176 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 FRG1DP-201ENST00000635586 771 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 OR4G2P-202ENST00000641004 1759 ntBASIC3.04□□□□□ -1.92
CDX2Q99626 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CDX2Q99626 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CDX2Q99626 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CDX2Q99626 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CDX2Q99626 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
CDX2Q99626 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CDX2Q99626 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CDX2Q99626 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CDX2Q99626 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.03□□□□□ -1.92
CDX2Q99626 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.03□□□□□ -1.92
CDX2Q99626 Y_RNA.338-201ENST00000365320 114 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 SNORA9.2-201ENST00000365361 133 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.03□□□□□ -1.92
CDX2Q99626 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.03□□□□□ -1.92
CDX2Q99626 MIR512-1-201ENST00000384913 84 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 EI24P2-201ENST00000397776 1076 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 AL138827.1-201ENST00000402666 306 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 HMGB1P13-201ENST00000406019 642 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 UBE2V1P15-201ENST00000407776 448 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 RNA5SP425-201ENST00000410336 112 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.03□□□□□ -1.92
CDX2Q99626 RPL30P2-201ENST00000414021 291 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 AL357078.2-201ENST00000416486 427 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 MTND4LP7-201ENST00000431728 294 ntBASIC3.03□□□□□ -1.92
CDX2Q99626 AC023347.2-201ENST00000433994 462 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms