Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC130650.2-201ENST00000618736 2403 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AF117829.1-206ENST00000621883 3802 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.9□□□□□ -1.94
CCDC54Q8NEL0 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
CCDC54Q8NEL0 AC103988.1-201ENST00000566382 2177 ntBASIC2.9□□□□□ -1.94
CCDC54Q8NEL0 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.94
CCDC54Q8NEL0 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AL645937.1-201ENST00000641739 1652 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 RNU6-236P-201ENST00000363886 106 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 CGA-201ENST00000369582 729 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 DEFB109C-201ENST00000382575 264 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 DEFB109B-201ENST00000382656 264 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 SNORD3H-201ENST00000384486 214 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 RNU6-1000P-201ENST00000391066 106 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 RAB28P1-201ENST00000411517 641 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC092634.6-201ENST00000418558 192 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 DBIP2-201ENST00000419076 262 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 ELOCP13-201ENST00000443934 329 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 ACTR3BP4-201ENST00000503033 1244 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC008427.1-201ENST00000503102 655 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 OR5H5P-201ENST00000503164 928 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC008837.1-201ENST00000511513 412 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 RN7SKP116-201ENST00000516902 319 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 HMGB1P1-201ENST00000522557 636 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC104417.1-201ENST00000523974 751 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AP004371.1-201ENST00000525240 214 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 NDUFS5P6-201ENST00000529136 295 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 OR8K4P-201ENST00000534608 872 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC074051.3-201ENST00000570238 358 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 LARP7P2-201ENST00000575306 125 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC006116.7-201ENST00000590141 756 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AL022067.1-201ENST00000602426 454 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 IGHV3-29-201ENST00000604817 344 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AF129408.1-201ENST00000608767 431 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC010975.3-201ENST00000618727 978 ntBASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC54Q8NEL0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU6-115P-201ENST00000364310 107 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU6-1181P-201ENST00000384191 106 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 MTCO1P56-201ENST00000401674 224 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL079342.2-201ENST00000403367 482 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL583834.1-201ENST00000406943 343 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 MIR1250-201ENST00000408098 113 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU6ATAC-201ENST00000408749 126 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNA5SP56-201ENST00000410277 118 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 SDCBPP3-201ENST00000419629 891 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 ZNF736P1Y-201ENST00000440402 1276 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RPL17P49-201ENST00000443728 411 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL592437.1-201ENST00000443781 492 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 PABPC1P3-201ENST00000469174 459 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 ST13P14-201ENST00000474095 734 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC106707.2-201ENST00000484182 374 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RN7SL283P-201ENST00000489055 303 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC108078.3-201ENST00000502633 489 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 DYNLL1P6-201ENST00000503440 264 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 HMGB1P22-201ENST00000505315 124 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU1-61P-201ENST00000516107 151 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU1-95P-201ENST00000516357 160 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU1-128P-201ENST00000516704 160 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 RNU6-1028P-201ENST00000517164 93 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC118942.1-201ENST00000529674 1035 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 YWHAZP1-201ENST00000556286 722 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms