Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP000790.1-201ENST00000528891 737 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.16□□□□□ -1.9
SHMT2P34897 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.16□□□□□ -1.9
SHMT2P34897 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHMT2P34897 AC074051.3-201ENST00000570238 358 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.16□□□□□ -1.9
SHMT2P34897 MIR5680-201ENST00000577577 84 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.16□□□□□ -1.9
SHMT2P34897 AC068620.3-201ENST00000602749 560 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 AL606834.2-201ENST00000602954 668 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.16□□□□□ -1.9
SHMT2P34897 AC012468.1-201ENST00000604888 430 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 AC011816.2-201ENST00000607089 556 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 VN1R74P-201ENST00000613259 503 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
SHMT2P34897 AC098679.5-201ENST00000624394 571 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 AC117529.2-201ENST00000512159 2068 ntBASIC3.16□□□□□ -1.9
SHMT2P34897 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHMT2P34897 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.16□□□□□ -1.9
SHMT2P34897 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.16□□□□□ -1.9
SHMT2P34897 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SHMT2P34897 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
SHMT2P34897 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
SHMT2P34897 AC073346.2-201ENST00000624724 2058 ntBASIC3.15□□□□□ -1.9
SHMT2P34897 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SHMT2P34897 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
SHMT2P34897 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHMT2P34897 SNORA38.1-201ENST00000364172 131 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 SNORA70.4-201ENST00000365509 134 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
SHMT2P34897 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.15□□□□□ -1.91
SHMT2P34897 RNU4-47P-201ENST00000410876 114 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT2P34897 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC096632.1-201ENST00000427395 310 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SHMT2P34897 SLC31A1P1-201ENST00000451221 567 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 HMGN3P1-201ENST00000453847 193 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AC244505.3-201ENST00000454598 187 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AC109925.1-201ENST00000478069 331 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 GAPDHP39-201ENST00000481866 979 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 RNA5SP380-201ENST00000517190 98 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC092470.1-201ENST00000546187 132 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 OR6C73P-201ENST00000546432 358 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.15□□□□□ -1.91
SHMT2P34897 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT2P34897 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT2P34897 AP000238.1-201ENST00000608759 426 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AP005137.2-201ENST00000609238 400 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 MIR7112-201ENST00000616126 65 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AL512427.1-201ENST00000618593 349 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.15□□□□□ -1.91
SHMT2P34897 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AL138955.1-201ENST00000622881 1040 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT2P34897 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHMT2P34897 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
SHMT2P34897 AC110774.1-201ENST00000623567 2018 ntBASIC3.15□□□□□ -1.91
SHMT2P34897 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT2P34897 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SHMT2P34897 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.14□□□□□ -1.91
SHMT2P34897 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.14□□□□□ -1.91
SHMT2P34897 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.14□□□□□ -1.91
SHMT2P34897 ZNF37BP-203ENST00000452306 1352 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AC116096.1-201ENST00000566804 2314 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SHMT2P34897 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT2P34897 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT2P34897 RNU6-374P-201ENST00000364146 108 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 SNORD116-23-201ENST00000384645 92 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.14□□□□□ -1.91
SHMT2P34897 RNA5SP229-201ENST00000410809 99 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AC063979.1-201ENST00000415539 377 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 MTCYBP24-201ENST00000420387 1106 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT2P34897 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT2P34897 AC092634.2-201ENST00000428146 1010 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AC091862.1-201ENST00000438016 1100 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT2P34897 Z75741.1-201ENST00000446793 314 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT2P34897 AC093278.1-201ENST00000494700 600 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.14□□□□□ -1.91
SHMT2P34897 KCTD9P5-201ENST00000504141 1170 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT2P34897 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 RNU6-885P-201ENST00000516607 104 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 RNA5SP135-201ENST00000517019 125 ntBASIC3.14□□□□□ -1.91
SHMT2P34897 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms