Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC6.48□□□□□ -1.37
COL9A1P20849 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC6.48□□□□□ -1.37
COL9A1P20849 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.48□□□□□ -1.37
COL9A1P20849 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC6.48□□□□□ -1.37
COL9A1P20849 U8.21-201ENST00000459536 136 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 RPL37P6-202ENST00000464216 403 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 RN7SL481P-201ENST00000477764 299 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC6.48□□□□□ -1.37
COL9A1P20849 RNU6-390P-201ENST00000516259 103 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 AC007458.1-201ENST00000542812 373 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 MDM2-232ENST00000544561 213 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC6.48□□□□□ -1.37
COL9A1P20849 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.48□□□□□ -1.37
COL9A1P20849 MIR6793-201ENST00000612376 63 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL9A1P20849 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL9A1P20849 AL161756.3-201ENST00000641216 2071 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL9A1P20849 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.48□□□□□ -1.37
COL9A1P20849 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL9A1P20849 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.47□□□□□ -1.37
COL9A1P20849 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.47□□□□□ -1.37
COL9A1P20849 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 SAGE4P-201ENST00000442271 3381 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC6.47□□□□□ -1.37
COL9A1P20849 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.47□□□□□ -1.37
COL9A1P20849 SNORD116-18-201ENST00000383961 92 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL9A1P20849 SNORD78.2-201ENST00000391076 69 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 SNORA11F-201ENST00000408237 128 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 AC009237.10-201ENST00000414112 510 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.47□□□□□ -1.37
COL9A1P20849 AC004938.1-201ENST00000438468 308 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.47□□□□□ -1.37
COL9A1P20849 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.47□□□□□ -1.37
COL9A1P20849 RPS17P15-201ENST00000475609 349 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 RN7SL369P-201ENST00000477138 299 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 RNU6-1219P-201ENST00000516143 112 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 RNU6-1012P-201ENST00000516606 109 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 RNA5SP434-201ENST00000516647 121 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 CASP1P1-201ENST00000526345 212 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 TOMM20P2-201ENST00000540082 421 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.47□□□□□ -1.37
COL9A1P20849 MIR4646-201ENST00000580775 63 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 FKBP1AP1-201ENST00000594588 318 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 AC141002.1-201ENST00000607025 279 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 MIR15A-201ENST00000607334 83 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 SNORD91A-202ENST00000609620 191 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 MIR8076-201ENST00000611401 83 ntBASIC6.47□□□□□ -1.37
COL9A1P20849 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.47□□□□□ -1.37
COL9A1P20849 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL9A1P20849 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC6.46□□□□□ -1.37
COL9A1P20849 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL9A1P20849 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL9A1P20849 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL9A1P20849 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL9A1P20849 CASC19-228ENST00000641414 1684 ntBASIC6.46□□□□□ -1.37
COL9A1P20849 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.37
COL9A1P20849 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
COL9A1P20849 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL9A1P20849 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL9A1P20849 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL9A1P20849 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL9A1P20849 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
COL9A1P20849 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL9A1P20849 MIR375-201ENST00000362103 64 ntBASIC6.46□□□□□ -1.38
COL9A1P20849 Y_RNA.82-201ENST00000363000 102 ntBASIC6.46□□□□□ -1.38
COL9A1P20849 Y_RNA.92-201ENST00000363043 102 ntBASIC6.46□□□□□ -1.38
COL9A1P20849 Y_RNA.235-201ENST00000364412 102 ntBASIC6.46□□□□□ -1.38
COL9A1P20849 Y_RNA.306-201ENST00000365015 102 ntBASIC6.46□□□□□ -1.38
COL9A1P20849 Y_RNA.312-201ENST00000365089 102 ntBASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms