Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
LIMD1Q9UGP4 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
LIMD1Q9UGP4 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.35□□□□□ -1.39
LIMD1Q9UGP4 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
LIMD1Q9UGP4 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
LIMD1Q9UGP4 AC133552.1-201ENST00000569988 4007 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 Y_RNA.106-201ENST00000363189 100 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 RNU1-19P-201ENST00000363306 165 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 RN7SKP162-201ENST00000363605 345 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 Y_RNA.314-201ENST00000365114 102 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 MIR517A-201ENST00000385001 87 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AL590704.1-201ENST00000402856 794 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AL023284.3-201ENST00000407767 334 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AL096829.1-201ENST00000413677 457 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 RPS15AP10-201ENST00000432472 382 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 RANP2-201ENST00000456833 229 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC093852.1-201ENST00000503587 266 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC092436.3-201ENST00000511788 257 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 FTH1P9-201ENST00000513251 355 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 Y_RNA.715-201ENST00000517082 110 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC109446.1-201ENST00000566172 220 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 MIR4505-201ENST00000582238 73 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC233702.7-202ENST00000582941 211 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AC067852.3-201ENST00000589177 561 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AL596275.2-204ENST00000641628 552 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 AL596275.2-206ENST00000641957 626 ntBASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIMD1Q9UGP4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
LIMD1Q9UGP4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
LIMD1Q9UGP4 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
LIMD1Q9UGP4 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC011455.2-201ENST00000599320 3336 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MTND5P27-201ENST00000428871 1720 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AL161901.1-201ENST00000624954 3425 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC020633.1-201ENST00000468439 2247 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 SAMMSON-210ENST00000641260 1308 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 Y_RNA.461-201ENST00000384263 103 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 RNU6-842P-201ENST00000384269 107 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 Y_RNA.577-201ENST00000384794 101 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 RNU6-817P-201ENST00000391083 104 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 SPTLC1P2-201ENST00000407089 121 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MIR1302-6-201ENST00000408466 90 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 RN7SKP126-201ENST00000411143 300 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MRPS18CP6-201ENST00000423587 223 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 LAMTOR3P1-201ENST00000428620 370 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AL121871.1-201ENST00000443413 436 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 HSFY6P-201ENST00000445573 403 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 VN1R105P-201ENST00000486595 910 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 RPL17P19-201ENST00000489069 552 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 RNA5SP116-201ENST00000516132 98 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 SNORA70.20-201ENST00000516848 126 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC022790.1-201ENST00000522872 204 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC023157.2-201ENST00000540596 141 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MIR1269B-201ENST00000580405 75 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 MIR5692A1-201ENST00000580523 69 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC012119.1-201ENST00000603184 222 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 IGHV3-29-201ENST00000604817 344 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 FAM27E4-201ENST00000605259 342 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms