Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.15□□□□□ -1.75
PTPN9P43378 PABPC1P7-201ENST00000413177 1513 ntBASIC4.15□□□□□ -1.75
PTPN9P43378 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN9P43378 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN9P43378 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN9P43378 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
PTPN9P43378 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN9P43378 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN9P43378 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
PTPN9P43378 FAM91A3P-201ENST00000456826 2544 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 RNU1-13P-201ENST00000384499 162 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AL121972.1-201ENST00000402023 252 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 RPL21P65-201ENST00000406094 466 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 TPMTP3-201ENST00000411928 735 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AC004987.3-201ENST00000413879 771 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 TPMTP2-201ENST00000414372 726 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 NPM1P11-201ENST00000417106 855 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 RPL7P30-201ENST00000420888 709 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 OFD1P18Y-201ENST00000420889 959 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AL691449.1-201ENST00000426570 421 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 VN1R108P-201ENST00000431580 830 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN9P43378 KCTD9P3-201ENST00000434597 1169 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 TBCAP1-201ENST00000436520 327 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN9P43378 AL136126.1-201ENST00000473603 402 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 RPS26P15-201ENST00000488067 348 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 RPL7P24-201ENST00000493052 752 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AC093767.1-201ENST00000504523 156 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 RNU6-150P-201ENST00000516237 95 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 NDUFA5P2-201ENST00000519723 344 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC4.14□□□□□ -1.75
PTPN9P43378 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.14□□□□□ -1.75
PTPN9P43378 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.14□□□□□ -1.75
PTPN9P43378 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 CENPUP2-201ENST00000555897 1186 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 PCMTD1P2-201ENST00000565017 355 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 MIR4697-201ENST00000582977 78 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.14□□□□□ -1.75
PTPN9P43378 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 AP003117.2-201ENST00000606010 545 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN9P43378 MIR6810-201ENST00000622701 70 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 AC139792.2-201ENST00000624218 587 ntBASIC4.14□□□□□ -1.75
PTPN9P43378 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN9P43378 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PTPN9P43378 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN9P43378 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.14□□□□□ -1.75
PTPN9P43378 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN9P43378 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN9P43378 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN9P43378 IPO8P1-201ENST00000455509 3109 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC106871.1-201ENST00000568324 3102 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PTPN9P43378 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN9P43378 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 SNORA70E-201ENST00000384492 135 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 SNORA26.8-201ENST00000391306 124 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
PTPN9P43378 RN7SKP266-201ENST00000410232 287 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 RNU4-6P-201ENST00000410804 122 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 FNDC3CP-201ENST00000420795 1155 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC012065.2-201ENST00000421295 375 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC096638.2-201ENST00000434965 711 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 RAP1BP2-201ENST00000478270 544 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC080014.1-201ENST00000496877 1201 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC087369.1-201ENST00000520775 996 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC024909.2-201ENST00000553035 286 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC007424.1-203ENST00000554613 687 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN9P43378 MAGOH2P-202ENST00000584384 429 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC112187.2-201ENST00000604345 283 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC012360.2-201ENST00000609349 391 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms