Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 FKBP1BP1-201ENST00000553366 325 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 AC131902.3-201ENST00000611767 581 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AP000542.2-201ENST00000623199 6179 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 NEAT1-202ENST00000501122 22743 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 RN7SKP44-201ENST00000363602 316 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AL663109.1-201ENST00000411498 844 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC078974.1-201ENST00000411597 223 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 TMSB10P2-201ENST00000416049 131 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 RPL23AP38-201ENST00000423801 469 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 TPTE2P5-203ENST00000458118 728 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 RPL7P15-201ENST00000461190 712 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC023141.12-201ENST00000512399 199 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 RNU6-798P-201ENST00000516912 103 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC022616.6-201ENST00000520479 119 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AP003730.1-201ENST00000524605 285 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AP002963.1-201ENST00000530590 184 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AL157394.1-201ENST00000562983 1224 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC087481.2-201ENST00000565492 330 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC121334.2-201ENST00000605387 271 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AP000254.1-201ENST00000609934 520 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 AC009159.1-201ENST00000618386 642 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 C2orf27A-204ENST00000623058 969 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 MIR3653-201ENST00000625572 110 ntBASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC9Q9Y3X0 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 CGA-201ENST00000369582 729 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 OR5H15-201ENST00000383696 930 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP187-201ENST00000384400 119 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP372-201ENST00000390836 115 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AL590762.2-201ENST00000395798 571 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 Z98745.1-201ENST00000402553 494 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 CCNG1P1-201ENST00000406783 885 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 SNORA11.2-201ENST00000408318 127 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RPL12P9-201ENST00000412942 488 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 SPA17P1-201ENST00000416656 452 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AL353777.1-201ENST00000425552 326 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RPL7P2-201ENST00000427639 268 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RAC1P7-201ENST00000445367 377 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RPL7P23-201ENST00000493874 747 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RN7SL558P-201ENST00000497468 299 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 NIFKP7-201ENST00000503365 834 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC113430.1-201ENST00000506872 718 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC026801.2-201ENST00000515352 425 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 HMGN1P28-201ENST00000521340 364 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RPL21P5-201ENST00000554662 472 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC137800.2-201ENST00000574375 120 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC009977.1-201ENST00000586015 570 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC100793.4-201ENST00000613683 429 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 MIR6075-201ENST00000620782 95 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC112204.3-201ENST00000623822 332 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC244258.1-201ENST00000637553 1071 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AC092104.1-201ENST00000497346 1441 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AL645937.1-201ENST00000641739 1652 ntBASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC9Q9Y3X0 AP001029.2-203ENST00000589795 4910 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms