Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RN7SL30P-201ENST00000488416 306 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 DEFB109F-201ENST00000491870 277 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC108471.1-201ENST00000513977 287 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC114797.1-201ENST00000514003 728 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 RNU4-49P-201ENST00000516080 140 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 RNU6-1261P-201ENST00000517194 104 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC134698.5-201ENST00000519444 336 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AP002812.4-201ENST00000532139 286 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC063950.1-201ENST00000552036 308 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC022884.3-201ENST00000579571 248 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 RN7SL176P-201ENST00000580352 264 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC010525.2-201ENST00000590920 195 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC108751.5-201ENST00000492880 1336 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC39Q9UFE4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC39Q9UFE4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RNU6-702P-201ENST00000364982 107 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 MIR223-201ENST00000385204 110 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RNU6-308P-201ENST00000390957 107 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 NDUFB4P5-201ENST00000415445 361 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RPS26P2-201ENST00000440331 348 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RPL17P49-201ENST00000443728 411 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AL389915.2-201ENST00000454576 441 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC091685.2-201ENST00000454924 864 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 BX248409.1-201ENST00000455497 255 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 MTCO1P42-201ENST00000457379 726 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 U8.20-201ENST00000459445 131 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RN7SL172P-201ENST00000460535 303 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 HMGN2P26-201ENST00000463169 339 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 UBA52P7-201ENST00000486088 380 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RNU6-559P-201ENST00000516151 98 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RN7SKP260-201ENST00000516907 149 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 RNA5SP135-201ENST00000517019 125 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 PSMA2P1-201ENST00000526365 646 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 MIR3176-201ENST00000582210 90 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AL359999.1-201ENST00000604513 294 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC113194.1-201ENST00000606037 500 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 AC000123.3-201ENST00000624029 4975 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 Z95327.2-201ENST00000414579 1873 ntBASIC5.71□□□□□ -1.5
CCDC39Q9UFE4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC092435.4-201ENST00000623012 4159 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 HSPA8P18-201ENST00000439846 1928 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 OR11H4-201ENST00000315409 1082 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 RN7SKP44-201ENST00000363602 316 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 RNU6-1297P-201ENST00000384415 104 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AL592114.1-201ENST00000403842 483 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 RN7SKP114-201ENST00000410327 279 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms