Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP28Q96RU2 USP8P1-201ENST00000494673 3183 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP28Q96RU2 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP28Q96RU2 AF127577.6-201ENST00000623352 2191 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP28Q96RU2 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP28Q96RU2 AL157700.1-201ENST00000561973 1432 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 MTCO1P6-201ENST00000481192 1384 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 RPL7P26-201ENST00000333817 754 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 SNORD56.3-201ENST00000363507 71 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AL079342.2-201ENST00000403367 482 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 ELOCP9-201ENST00000418624 239 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC007389.2-201ENST00000434630 306 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AC084290.1-201ENST00000434995 374 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 HSPD1P21-201ENST00000436541 245 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 FGF7P5-201ENST00000441829 291 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 ATP5C1P1-201ENST00000441945 895 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 RPL26P28-201ENST00000451325 435 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 SNORA64.4-201ENST00000516632 81 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 RN7SKP116-201ENST00000516902 319 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AC023632.1-201ENST00000518463 375 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC124293.1-201ENST00000530034 493 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 OR5D17P-201ENST00000531492 978 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 MIR5047-201ENST00000579212 100 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AP001542.2-201ENST00000593141 364 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AL353778.1-201ENST00000603149 408 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AC007349.4-201ENST00000608114 532 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.8□□□□□ -1.8
USP28Q96RU2 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 AL021368.2-201ENST00000606125 5352 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.8□□□□□ -1.8
USP28Q96RU2 MTCO1P24-201ENST00000515438 1558 ntBASIC3.8□□□□□ -1.8
USP28Q96RU2 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP28Q96RU2 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC026951.1-201ENST00000559530 2459 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP28Q96RU2 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP28Q96RU2 RNU4-92P-201ENST00000363783 136 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 snoZ40.1-201ENST00000364540 72 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 RNU6-707P-201ENST00000364647 95 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 EIF5P1-201ENST00000400019 1231 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AL355379.1-201ENST00000405542 640 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 RNU2-21P-201ENST00000410368 188 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 RNA5SP229-201ENST00000410809 99 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AL008987.1-201ENST00000415528 237 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC010099.3-201ENST00000423896 409 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AL009174.1-201ENST00000426577 416 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 RPL37P1-201ENST00000432310 284 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 MTCO2P20-201ENST00000437339 673 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC092641.1-201ENST00000440229 772 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC002542.1-201ENST00000440683 193 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 MRPL42P4-201ENST00000453267 443 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 RPL23AP62-201ENST00000463396 453 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 SNRPGP3-201ENST00000469405 227 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC069528.1-202ENST00000482888 637 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 FCF1P8-201ENST00000510322 597 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 RPL7L1P13-201ENST00000511702 739 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 IGKV2-23-201ENST00000518729 323 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms