Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC068880.5-201ENST00000624331 290 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL049536.1-201ENST00000625043 744 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC068137.3-201ENST00000639191 341 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC073869.6-201ENST00000640656 341 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 MARK2P15-201ENST00000432204 2186 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNU1-150P-201ENST00000362491 162 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNU4-1-201ENST00000363925 141 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNA5SP510-201ENST00000364697 99 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNA5SP235-201ENST00000365411 114 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-278P-201ENST00000390945 109 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 HMGB1P20-201ENST00000402555 677 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNU2-43P-201ENST00000410306 190 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RNU2-62P-201ENST00000410868 191 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 FCF1P9-201ENST00000412546 282 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 MTND3P17-201ENST00000416968 344 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 OR2AM1P-201ENST00000422137 422 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RPL31P35-201ENST00000431058 377 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL358934.1-201ENST00000432346 324 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 MTND3P21-201ENST00000433774 331 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC093156.1-201ENST00000440382 670 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RPL21P89-201ENST00000444021 467 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL354714.3-201ENST00000447284 493 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC079448.1-201ENST00000449377 373 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 SLC25A18P1-201ENST00000449385 454 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC079168.1-201ENST00000458741 345 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC091180.1-201ENST00000462104 372 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 RPS3AP50-201ENST00000487064 803 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC020893.1-201ENST00000502452 580 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC020593.1-201ENST00000507399 299 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC108078.1-201ENST00000508073 725 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 MTND6P2-201ENST00000512226 524 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC110775.1-201ENST00000513721 462 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 DEFB108A-201ENST00000530110 222 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL133153.1-201ENST00000557756 303 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AL360157.1-201ENST00000565962 87 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC012182.1-201ENST00000570133 895 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC005255.1-201ENST00000593748 216 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC245517.5-201ENST00000611529 162 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC099494.2-201ENST00000623371 978 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC004925.1-201ENST00000624256 2706 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 AC010300.1-201ENST00000600671 5134 ntBASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC28AQ8IWP9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-223P-201ENST00000362830 107 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-1074P-201ENST00000383995 104 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-629P-201ENST00000384061 103 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-754P-201ENST00000391166 107 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 GSTA9P-201ENST00000406231 611 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RNU4-65P-201ENST00000410473 140 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RPL23AP38-201ENST00000423801 469 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC137499.1-201ENST00000427602 88 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 COX6CP13-201ENST00000428703 226 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC092162.1-201ENST00000432828 434 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 MTND1P4-201ENST00000435196 415 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 USP9YP7-201ENST00000436723 430 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 HLA-N-201ENST00000437516 135 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 USP9YP32-201ENST00000452432 430 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AL645939.1-201ENST00000453429 797 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms