Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PPIAP17-201ENST00000438507 471 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 MTCO3P11-201ENST00000455103 774 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 RPL12P25-201ENST00000455592 494 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 RPL30P9-201ENST00000465586 330 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC1.71□□□□□ -2.14
COL7A1Q02388 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC1.71□□□□□ -2.14
COL7A1Q02388 MAL2-205ENST00000521048 575 ntTSL 4 BASIC1.71□□□□□ -2.14
COL7A1Q02388 AC018630.1-201ENST00000541376 925 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AC026464.5-201ENST00000562497 722 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC1.71□□□□□ -2.14
COL7A1Q02388 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC1.71□□□□□ -2.14
COL7A1Q02388 MIR3605-201ENST00000583214 100 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
COL7A1Q02388 SNORD114-26-201ENST00000363543 72 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 RNA5SP456-201ENST00000364002 114 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL138878.1-201ENST00000405131 347 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL583834.1-201ENST00000406943 343 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC1.71□□□□□ -2.14
COL7A1Q02388 RHEBP3-201ENST00000411920 351 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 SPA17P1-201ENST00000416656 452 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.71□□□□□ -2.14
COL7A1Q02388 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 ACTR6P1-201ENST00000514311 1104 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 MIR449C-201ENST00000516047 92 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 RNA5SP490-201ENST00000517141 136 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AP003385.6-201ENST00000531603 374 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 SNRPGP18-201ENST00000553000 214 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.6-201ENST00000603753 252 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.11-201ENST00000604059 253 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.10-201ENST00000604330 253 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AC008162.1-201ENST00000604718 254 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.1-201ENST00000604752 252 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.2-201ENST00000604983 252 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.5-201ENST00000605253 252 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.4-201ENST00000605279 254 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.12-201ENST00000605291 253 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.8-201ENST00000605353 252 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.9-201ENST00000605428 253 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL670379.7-201ENST00000605823 252 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AL008729.2-201ENST00000606393 473 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AC103710.2-201ENST00000609912 942 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 FTX-214ENST00000638437 12267 ntTSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 RNU6-1140P-201ENST00000410517 106 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 MTCYBP28-201ENST00000566728 1132 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AC110741.2-201ENST00000605278 268 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.7□□□□□ -2.14
COL7A1Q02388 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 RPL31P1-201ENST00000398116 372 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC1.7□□□□□ -2.14
COL7A1Q02388 AP000893.1-201ENST00000474462 794 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.7□□□□□ -2.14
COL7A1Q02388 NPM1P35-201ENST00000533043 868 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC1.7□□□□□ -2.14
COL7A1Q02388 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.7□□□□□ -2.14
COL7A1Q02388 AL450489.1-201ENST00000612071 468 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC1.7□□□□□ -2.14
COL7A1Q02388 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 Z98742.2-201ENST00000431564 187 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.7□□□□□ -2.14
COL7A1Q02388 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC1.7□□□□□ -2.14
COL7A1Q02388 AP001086.1-201ENST00000494882 321 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 SNORA9.3-201ENST00000516383 129 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 HSPE1P18-201ENST00000517602 280 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 OR8L1P-201ENST00000534005 955 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AK6P1-201ENST00000540219 478 ntBASIC1.7□□□□□ -2.14
COL7A1Q02388 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.7□□□□□ -2.14
COL7A1Q02388 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
COL7A1Q02388 PROS2P-201ENST00000474651 1951 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC1.69□□□□□ -2.14
COL7A1Q02388 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.69□□□□□ -2.14
COL7A1Q02388 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.69□□□□□ -2.14
COL7A1Q02388 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
COL7A1Q02388 RNA5SP502-201ENST00000362694 119 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
COL7A1Q02388 COX6CP2-201ENST00000444980 225 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 TRBV26-201ENST00000456572 344 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 DYNLL1P6-201ENST00000503440 264 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AC021146.5-201ENST00000503544 545 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 KCTD9P5-201ENST00000504141 1170 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AL133271.1-201ENST00000538229 291 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 ELOCP31-201ENST00000540463 467 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.69□□□□□ -2.14
COL7A1Q02388 RN7SL622P-201ENST00000585292 275 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 CRYM-AS1-204ENST00000637983 556 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AC016717.2-201ENST00000609089 5141 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
COL7A1Q02388 RNU6-249P-201ENST00000363016 102 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 RFX3-203ENST00000381984 364 ntTSL 3 BASIC1.69□□□□□ -2.14
COL7A1Q02388 RNA5SP270-201ENST00000411361 118 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms