Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 Z73965.1-201ENST00000623412 2297 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SCN4AP35499 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SCN4AP35499 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.18□□□□□ -1.9
SCN4AP35499 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SCN4AP35499 RNU6-670P-201ENST00000364312 104 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 RNU6-532P-201ENST00000384318 107 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 DHFRP5-201ENST00000406944 564 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.18□□□□□ -1.9
SCN4AP35499 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.18□□□□□ -1.9
SCN4AP35499 RPL9P32-201ENST00000464118 620 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 RN7SL633P-201ENST00000488974 297 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 OR5H5P-201ENST00000503164 928 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 KCTD9P5-201ENST00000504141 1170 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SCN4AP35499 SEC11B-201ENST00000518383 499 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 AC015712.3-201ENST00000559380 164 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 AC122134.1-201ENST00000565664 1104 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.18□□□□□ -1.9
SCN4AP35499 AC022387.2-201ENST00000604050 448 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 AC079791.1-201ENST00000605356 973 ntBASIC3.18□□□□□ -1.9
SCN4AP35499 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.18□□□□□ -1.9
SCN4AP35499 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.17□□□□□ -1.9
SCN4AP35499 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SCN4AP35499 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SCN4AP35499 AC004987.3-201ENST00000413879 771 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AL590103.1-201ENST00000434488 307 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 USP9YP7-201ENST00000436723 430 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 RPL31P20-201ENST00000449593 360 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 USP9YP32-201ENST00000452432 430 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AC108120.2-201ENST00000512973 294 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.17□□□□□ -1.9
SCN4AP35499 AC009063.1-201ENST00000563342 702 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.17□□□□□ -1.9
SCN4AP35499 AP004372.1-201ENST00000604842 844 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AC010680.4-201ENST00000605334 543 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AC034236.3-201ENST00000605999 461 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.17□□□□□ -1.9
SCN4AP35499 AL353743.4-201ENST00000422653 1547 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
SCN4AP35499 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.17□□□□□ -1.9
SCN4AP35499 AL049555.1-201ENST00000562834 1933 ntBASIC3.17□□□□□ -1.9
SCN4AP35499 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SCN4AP35499 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SCN4AP35499 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SCN4AP35499 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.16□□□□□ -1.9
SCN4AP35499 MTCYBP12-201ENST00000440559 1134 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.16□□□□□ -1.9
SCN4AP35499 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.16□□□□□ -1.9
SCN4AP35499 AC007938.3-201ENST00000604965 623 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 HMGB1P51-201ENST00000605166 638 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.16□□□□□ -1.9
SCN4AP35499 AP002967.1-201ENST00000624203 539 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SCN4AP35499 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.16□□□□□ -1.9
SCN4AP35499 AP000526.1-201ENST00000603308 1388 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
SCN4AP35499 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SCN4AP35499 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SCN4AP35499 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.16□□□□□ -1.9
SCN4AP35499 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.16□□□□□ -1.9
SCN4AP35499 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
SCN4AP35499 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.16□□□□□ -1.9
SCN4AP35499 RN7SL283P-201ENST00000489055 303 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
SCN4AP35499 AC008716.1-201ENST00000511084 513 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.16□□□□□ -1.9
SCN4AP35499 NTAN1P1-201ENST00000603150 646 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AC025811.1-201ENST00000604312 472 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AC005021.1-201ENST00000608730 355 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AC099778.2-201ENST00000610904 211 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 AL355493.4-201ENST00000618530 292 ntBASIC3.16□□□□□ -1.9
SCN4AP35499 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SCN4AP35499 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.15□□□□□ -1.9
SCN4AP35499 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCN4AP35499 RNU6-891P-201ENST00000384280 111 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 SNORD65-201ENST00000391079 73 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.15□□□□□ -1.91
SCN4AP35499 AC133134.1-201ENST00000466800 359 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 AC104629.2-201ENST00000468627 598 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 LARP7P4-201ENST00000481075 878 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.15□□□□□ -1.91
SCN4AP35499 AC009268.1-201ENST00000561352 1203 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.15□□□□□ -1.91
SCN4AP35499 AC012467.1-201ENST00000607740 256 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.15□□□□□ -1.91
SCN4AP35499 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.15□□□□□ -1.91
SCN4AP35499 RLIMP2-201ENST00000427891 1563 ntBASIC3.15□□□□□ -1.91
SCN4AP35499 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.15□□□□□ -1.91
SCN4AP35499 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCN4AP35499 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCN4AP35499 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCN4AP35499 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SCN4AP35499 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SCN4AP35499 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.15□□□□□ -1.91
SCN4AP35499 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SCN4AP35499 SNORA70E-201ENST00000384492 135 ntBASIC3.14□□□□□ -1.91
SCN4AP35499 MTND3P20-201ENST00000407663 186 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms