Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.35□□□□□ -1.71
HOXC9P31274 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 OR4U1P-201ENST00000554958 912 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 MIR3912-201ENST00000577566 105 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC015917.1-201ENST00000579654 510 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 LARP7P3-201ENST00000579888 337 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AP003973.1-201ENST00000604639 691 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 Z99289.3-201ENST00000605586 594 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC100793.4-201ENST00000613683 429 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AL157817.1-201ENST00000614264 790 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC021755.4-201ENST00000616620 456 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC243756.2-201ENST00000618406 463 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 MIR6852-201ENST00000621699 66 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AP002782.1-201ENST00000623107 614 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC097655.1-201ENST00000635075 318 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC9P31274 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC9P31274 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC9P31274 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC9P31274 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 RNA5SP322-201ENST00000363617 119 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 Y_RNA.510-201ENST00000384511 114 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 RNU6-1151P-201ENST00000384684 107 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 PRRC2CP1-201ENST00000404428 159 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 RPS24P7-201ENST00000416921 246 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 HMGB1P49-201ENST00000418882 569 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 MTCO2P21-201ENST00000419780 677 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AC010099.3-201ENST00000423896 409 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXC9P31274 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC9P31274 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 AC096576.1-201ENST00000489014 359 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 RNU6-885P-201ENST00000516607 104 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.34□□□□□ -1.71
HOXC9P31274 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 AP001317.1-201ENST00000531194 960 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AC023538.1-201ENST00000534576 736 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC9P31274 SERPINE4P-201ENST00000554978 281 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AC090888.2-201ENST00000559765 1144 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXC9P31274 HMGB3P26-201ENST00000560051 582 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 MIR4738-201ENST00000579134 87 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC9P31274 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC9P31274 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC9P31274 VN1R78P-201ENST00000597393 564 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 CLIC4P2-201ENST00000601934 717 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 ATP5A1P2-202ENST00000616464 443 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AL157770.1-201ENST00000623049 439 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 AP002791.1-201ENST00000623291 381 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC9P31274 Z99496.1-201ENST00000469424 1477 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 AL049555.1-201ENST00000562834 1933 ntBASIC4.34□□□□□ -1.71
HOXC9P31274 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC9P31274 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HOXC9P31274 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HOXC9P31274 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
HOXC9P31274 CEP170P1-201ENST00000502249 4587 ntBASIC4.34□□□□□ -1.72
HOXC9P31274 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.34□□□□□ -1.72
HOXC9P31274 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HOXC9P31274 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC9P31274 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC9P31274 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
HOXC9P31274 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC9P31274 RNU6-839P-201ENST00000363347 108 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 RNA5SP391-201ENST00000363456 119 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 RNU4-28P-201ENST00000364739 141 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 SNORD65.1-201ENST00000390889 71 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 MIR1289-1-201ENST00000408836 144 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXC9P31274 SEPT7P5-201ENST00000434048 306 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXC9P31274 GTF2IP7-202ENST00000436677 309 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC092393.1-201ENST00000439625 742 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC093155.1-201ENST00000440164 826 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 RPL23AP76-201ENST00000441860 458 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXC9P31274 HMGB1P48-201ENST00000446155 598 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 MTND1P31-201ENST00000449206 961 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 NECAP1P2-201ENST00000455668 727 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC011979.1-201ENST00000472300 483 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 RPL30P11-201ENST00000495304 339 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms