Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 snoU13.7-201ENST00000459220 104 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 RN7SL184P-201ENST00000488308 297 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 RNU6-27P-201ENST00000516146 107 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 Y_RNA.679-201ENST00000516416 91 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.52□□□□□ -1.37
COL9A1P20849 MIR4282-201ENST00000583613 67 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.52□□□□□ -1.37
COL9A1P20849 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 AC009237.3-203ENST00000442128 3551 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC6.52□□□□□ -1.37
COL9A1P20849 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.52□□□□□ -1.37
COL9A1P20849 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL9A1P20849 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.52□□□□□ -1.37
COL9A1P20849 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
COL9A1P20849 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.51□□□□□ -1.37
COL9A1P20849 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 RNU6-153P-201ENST00000364422 104 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 RNA5SP205-201ENST00000364653 136 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 RNU6-44P-201ENST00000384045 107 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 SNORD63-201ENST00000384262 68 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
COL9A1P20849 RNU6-817P-201ENST00000391083 104 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 MIR190B-201ENST00000401119 79 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 RNU6-607P-201ENST00000411283 108 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC6.51□□□□□ -1.37
COL9A1P20849 BX323845.3-201ENST00000428215 527 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.51□□□□□ -1.37
COL9A1P20849 AC234775.1-201ENST00000454247 670 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 HSPE1P25-201ENST00000455484 251 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 RN7SKP210-201ENST00000459176 261 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 RPS18P6-201ENST00000476880 458 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 RPSAP50-201ENST00000481955 852 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 RN7SL561P-201ENST00000488553 281 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 AC140059.1-201ENST00000489238 361 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 AL590705.4-201ENST00000532209 134 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC6.51□□□□□ -1.37
COL9A1P20849 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.51□□□□□ -1.37
COL9A1P20849 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC6.51□□□□□ -1.37
COL9A1P20849 PRPF19P1-201ENST00000584766 898 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
COL9A1P20849 COX6CP7-201ENST00000597056 208 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 AC240442.1-201ENST00000616055 283 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 MAPK10-287ENST00000641217 3037 ntBASIC6.51□□□□□ -1.37
COL9A1P20849 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
COL9A1P20849 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.51□□□□□ -1.37
COL9A1P20849 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC6.51□□□□□ -1.37
COL9A1P20849 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL9A1P20849 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.5□□□□□ -1.37
COL9A1P20849 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.5□□□□□ -1.37
COL9A1P20849 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.5□□□□□ -1.37
COL9A1P20849 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.5□□□□□ -1.37
COL9A1P20849 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC6.5□□□□□ -1.37
COL9A1P20849 AC004158.1-201ENST00000564508 4319 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.5□□□□□ -1.37
COL9A1P20849 RPL9P7-201ENST00000330965 580 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 RNVU1-3-201ENST00000364313 161 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 RNU6-937P-201ENST00000384325 106 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL9A1P20849 U3.35-201ENST00000408405 208 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 RN7SKP213-201ENST00000410746 298 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 RNU2-61P-201ENST00000411069 191 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC6.5□□□□□ -1.37
COL9A1P20849 AL513043.1-201ENST00000439124 535 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 BTF3P6-201ENST00000448054 499 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 TPT1P12-201ENST00000448968 492 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 RPS11P1-201ENST00000451072 473 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 RPL9P9-202ENST00000466501 579 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms