Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC002381.1-201ENST00000447049 280 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG1P18858 MTCO3P2-201ENST00000457365 171 ntBASIC5.82□□□□□ -1.48
LIG1P18858 RN7SL222P-201ENST00000476452 299 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG1P18858 AC090453.1-201ENST00000495560 436 ntBASIC5.82□□□□□ -1.48
LIG1P18858 RPS4XP20-201ENST00000505751 772 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC008638.1-201ENST00000506035 866 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC006499.3-201ENST00000506077 748 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG1P18858 RN7SKP13-201ENST00000515933 244 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG1P18858 AC005868.1-201ENST00000536421 331 ntBASIC5.82□□□□□ -1.48
LIG1P18858 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG1P18858 AC123904.2-201ENST00000548059 300 ntBASIC5.82□□□□□ -1.48
LIG1P18858 HAUS8P1-201ENST00000549005 542 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC051619.2-201ENST00000559063 397 ntBASIC5.82□□□□□ -1.48
LIG1P18858 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.82□□□□□ -1.48
LIG1P18858 HNRNPCP4-201ENST00000571636 900 ntBASIC5.82□□□□□ -1.48
LIG1P18858 MIR4716-201ENST00000579628 84 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG1P18858 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG1P18858 AC121334.2-201ENST00000605387 271 ntBASIC5.82□□□□□ -1.48
LIG1P18858 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG1P18858 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG1P18858 AL356585.4-201ENST00000623078 1229 ntBASIC5.82□□□□□ -1.48
LIG1P18858 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG1P18858 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG1P18858 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG1P18858 AC134503.1-201ENST00000633048 54 ntBASIC5.82□□□□□ -1.48
LIG1P18858 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIG1P18858 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIG1P18858 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.82□□□□□ -1.48
LIG1P18858 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG1P18858 AC008079.2-201ENST00000623543 20396 ntBASIC5.82□□□□□ -1.48
LIG1P18858 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LIG1P18858 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG1P18858 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIG1P18858 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 AC074029.4-201ENST00000624796 1859 ntBASIC5.81□□□□□ -1.48
LIG1P18858 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG1P18858 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 RNU6-169P-201ENST00000365336 107 ntBASIC5.81□□□□□ -1.48
LIG1P18858 UBBP2-201ENST00000376781 231 ntBASIC5.81□□□□□ -1.48
LIG1P18858 MIR600-201ENST00000385007 98 ntBASIC5.81□□□□□ -1.48
LIG1P18858 UQCRBP1-201ENST00000421129 336 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG1P18858 SRIP2-201ENST00000428470 166 ntBASIC5.81□□□□□ -1.48
LIG1P18858 RBMY2QP-201ENST00000429799 1147 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 IFNA20P-201ENST00000436840 528 ntBASIC5.81□□□□□ -1.48
LIG1P18858 Z80107.2-201ENST00000445127 392 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 Y_RNA.632-201ENST00000459189 102 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG1P18858 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG1P18858 AC010587.1-201ENST00000505809 469 ntBASIC5.81□□□□□ -1.48
LIG1P18858 HMGB3P16-201ENST00000508037 287 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 AC112206.3-201ENST00000514578 389 ntBASIC5.81□□□□□ -1.48
LIG1P18858 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 RN7SKP116-201ENST00000516902 319 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 TRMT10BP1-201ENST00000519377 943 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC107953.1-201ENST00000522216 297 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC022861.1-201ENST00000522981 663 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 AC010525.2-201ENST00000590920 195 ntBASIC5.81□□□□□ -1.48
LIG1P18858 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 AL133215.3-201ENST00000609801 448 ntBASIC5.81□□□□□ -1.48
LIG1P18858 AC105429.2-201ENST00000610567 517 ntBASIC5.81□□□□□ -1.48
LIG1P18858 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIG1P18858 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG1P18858 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG1P18858 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIG1P18858 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG1P18858 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 MTND5P3-201ENST00000438536 1800 ntBASIC5.81□□□□□ -1.48
LIG1P18858 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG1P18858 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG1P18858 AL731566.1-201ENST00000620490 1937 ntBASIC5.8□□□□□ -1.48
LIG1P18858 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
LIG1P18858 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
LIG1P18858 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG1P18858 Y_RNA.132-201ENST00000363421 102 ntBASIC5.8□□□□□ -1.48
LIG1P18858 Y_RNA.315-201ENST00000365117 102 ntBASIC5.8□□□□□ -1.48
LIG1P18858 RNU6-744P-201ENST00000365557 107 ntBASIC5.8□□□□□ -1.48
LIG1P18858 RNU6-1316P-201ENST00000384242 108 ntBASIC5.8□□□□□ -1.48
LIG1P18858 SPTLC1P2-201ENST00000407089 121 ntBASIC5.8□□□□□ -1.48
LIG1P18858 AC009161.1-201ENST00000417306 376 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms