Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KLRA1P-201ENST00000503499 986 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 MTCO2P30-201ENST00000503662 364 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A1P12109 AC022447.3-201ENST00000506865 495 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 POU5F1P7-201ENST00000508759 541 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC105914.1-201ENST00000511798 226 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A1P12109 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.2□□□□□ -1.58
COL6A1P12109 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A1P12109 ANP32BP3-201ENST00000559213 706 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.2□□□□□ -1.58
COL6A1P12109 AP001180.3-201ENST00000582221 145 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC017100.2-201ENST00000584628 355 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC009977.1-201ENST00000586015 570 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 IPO5P1-202ENST00000600039 287 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC005034.5-201ENST00000604219 466 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC007363.1-201ENST00000604736 620 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A1P12109 AC105429.2-201ENST00000610567 517 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC126177.8-201ENST00000618339 1015 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC068880.5-201ENST00000624331 290 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 MIR3653-201ENST00000625572 110 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.2□□□□□ -1.58
COL6A1P12109 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL6A1P12109 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.2□□□□□ -1.58
COL6A1P12109 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.2□□□□□ -1.58
COL6A1P12109 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A1P12109 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A1P12109 AC008079.2-201ENST00000623543 20396 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A1P12109 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
COL6A1P12109 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 OR4A15-201ENST00000314706 1035 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A1P12109 Y_RNA.160-201ENST00000363677 92 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 RNU6-1090P-201ENST00000364065 94 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 RNA5SP366-201ENST00000365454 123 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A1P12109 RNU6-877P-201ENST00000383868 107 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AL450338.1-201ENST00000407987 512 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.19□□□□□ -1.58
COL6A1P12109 RPL23AP26-201ENST00000412728 464 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A1P12109 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 MTCO1P20-201ENST00000425366 358 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 BX890604.2-201ENST00000427883 474 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC092162.1-201ENST00000432828 434 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AL451139.1-201ENST00000434718 346 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 PGBD4P3-201ENST00000440731 581 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A1P12109 MEMO1P3-201ENST00000459811 302 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 UQCRHP4-201ENST00000471686 272 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A1P12109 ARL4AP2-201ENST00000507378 601 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC093809.1-201ENST00000509155 340 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 RNU6-488P-201ENST00000515918 99 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 RN7SKP234-201ENST00000517173 224 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC013828.2-201ENST00000532487 235 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A1P12109 AC044792.1-201ENST00000593294 196 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A1P12109 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A1P12109 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
COL6A1P12109 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 AL031595.2-201ENST00000624215 19071 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 OR4G11P-202ENST00000642116 1414 ntBASIC5.19□□□□□ -1.58
COL6A1P12109 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL6A1P12109 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
COL6A1P12109 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A1P12109 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL6A1P12109 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.18□□□□□ -1.58
COL6A1P12109 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 ARL4AP5-201ENST00000404372 599 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 VN1R8P-201ENST00000407739 893 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 TMSB10P2-201ENST00000416049 131 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.18□□□□□ -1.58
COL6A1P12109 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 NANOGP6-201ENST00000429190 847 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC109583.1-201ENST00000432156 268 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.18□□□□□ -1.58
COL6A1P12109 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms