Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A1P02462 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A1P02462 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
COL4A1P02462 SNORA41-201ENST00000384675 132 ntBASIC2.81□□□□□ -1.96
COL4A1P02462 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A1P02462 RPL23AP11-201ENST00000475260 469 ntBASIC2.81□□□□□ -1.96
COL4A1P02462 AP001086.1-201ENST00000494882 321 ntBASIC2.81□□□□□ -1.96
COL4A1P02462 MTCYBP20-201ENST00000524239 1129 ntBASIC2.81□□□□□ -1.96
COL4A1P02462 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A1P02462 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A1P02462 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A1P02462 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A1P02462 MIR7111-201ENST00000619751 72 ntBASIC2.81□□□□□ -1.96
COL4A1P02462 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC2.81□□□□□ -1.96
COL4A1P02462 GSTA9P-201ENST00000406231 611 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 AC092427.1-202ENST00000430569 476 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.8□□□□□ -1.96
COL4A1P02462 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A1P02462 CACYBPP1-201ENST00000438592 684 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 AC068587.2-201ENST00000478386 781 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 ATP5F1P5-201ENST00000526403 760 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 CR589904.2-201ENST00000612533 440 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A1P02462 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A1P02462 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
COL4A1P02462 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A1P02462 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.8□□□□□ -1.96
COL4A1P02462 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.8□□□□□ -1.96
COL4A1P02462 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
COL4A1P02462 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
COL4A1P02462 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A1P02462 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
COL4A1P02462 RN7SKP44-201ENST00000363602 316 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 RNU6-178P-201ENST00000384631 104 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 HMGB1P15-201ENST00000453854 435 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A1P02462 ELOCP31-201ENST00000540463 467 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A1P02462 AC105036.1-201ENST00000566222 271 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.79□□□□□ -1.96
COL4A1P02462 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A1P02462 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A1P02462 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A1P02462 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A1P02462 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
COL4A1P02462 MIR3074-201ENST00000384885 81 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 SNORD88.1-201ENST00000408684 91 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A1P02462 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.79□□□□□ -1.96
COL4A1P02462 AC013410.1-201ENST00000436223 1232 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AL354710.1-201ENST00000453641 246 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 MTCO3P11-201ENST00000455103 774 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A1P02462 AC106872.2-201ENST00000494303 480 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC108210.2-201ENST00000503681 201 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A1P02462 AC091515.1-201ENST00000548110 679 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC078814.3-201ENST00000553036 491 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 MIR4644-201ENST00000579929 84 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A1P02462 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A1P02462 AL645944.1-201ENST00000603857 493 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 AC002076.2-201ENST00000617362 122 ntBASIC2.79□□□□□ -1.96
COL4A1P02462 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A1P02462 MTND5P27-201ENST00000428871 1720 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A1P02462 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A1P02462 AC093311.1-201ENST00000506586 2021 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 FAM133CP-201ENST00000332869 704 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 SNORA25.6-201ENST00000364121 118 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A1P02462 AC107081.1-201ENST00000414975 361 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A1P02462 GAPDHP27-201ENST00000447427 1020 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.78□□□□□ -1.96
COL4A1P02462 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.78□□□□□ -1.96
COL4A1P02462 AP003467.2-201ENST00000520175 319 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 HMGB1P41-201ENST00000520234 440 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
COL4A1P02462 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.78□□□□□ -1.96
COL4A1P02462 AC022884.3-201ENST00000579571 248 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 AC084035.1-201ENST00000634543 607 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 AC110994.2-201ENST00000635481 492 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A1P02462 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A1P02462 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC2.78□□□□□ -1.96
COL4A1P02462 AC095050.2-201ENST00000510748 1458 ntBASIC2.78□□□□□ -1.96
COL4A1P02462 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A1P02462 AC008432.1-201ENST00000615912 1320 ntBASIC2.78□□□□□ -1.97
COL4A1P02462 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A1P02462 AC093010.3-201ENST00000570269 15214 ntBASIC2.77□□□□□ -1.97
COL4A1P02462 ZNF355P-201ENST00000427301 3216 ntBASIC2.77□□□□□ -1.97
COL4A1P02462 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A1P02462 AC009501.3-201ENST00000605001 1352 ntBASIC2.77□□□□□ -1.97
COL4A1P02462 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A1P02462 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A1P02462 SNORD21-201ENST00000383953 95 ntBASIC2.77□□□□□ -1.97
COL4A1P02462 MIR221-201ENST00000385135 110 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms