Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC022893.2-201ENST00000564832 3296 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 MTCO1P9-201ENST00000505577 1534 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
TRIM39Q9HCM9 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
TRIM39Q9HCM9 INTS6P1-201ENST00000504674 2530 ntBASIC4.96□□□□□ -1.61
TRIM39Q9HCM9 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 RNU6-1120P-201ENST00000362988 108 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 RNU6-356P-201ENST00000384140 107 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 MIR153-1-201ENST00000384914 90 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 RNA5SP56-201ENST00000410277 118 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 HMGB3P20-201ENST00000417997 600 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 BTF3P10-201ENST00000433415 495 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 FTH1P1-201ENST00000437933 532 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 RPS29P9-201ENST00000440360 171 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC140076.1-201ENST00000449897 361 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 RN7SL319P-201ENST00000480656 221 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC140172.1-201ENST00000502928 141 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 NIFKP7-201ENST00000503365 834 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 FTH1P21-201ENST00000512179 511 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC008752.3-201ENST00000588113 712 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AL162413.1-201ENST00000603198 110 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC007621.1-201ENST00000604544 437 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AL031176.1-201ENST00000604554 466 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 AC005609.4-201ENST00000625071 447 ntBASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM39Q9HCM9 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 BTBD10P1-201ENST00000549824 1352 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC026951.1-201ENST00000559530 2459 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 OR5J1P-201ENST00000313544 939 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RN7SKP95-201ENST00000362860 303 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 Y_RNA.390-201ENST00000383932 102 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RNU6-483P-201ENST00000384088 108 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AL109941.1-201ENST00000401925 229 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RPL21P67-201ENST00000402896 478 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 U3.32-201ENST00000408116 212 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RN7SKP125-201ENST00000410481 302 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 UQCRBP1-201ENST00000421129 336 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AL391219.1-201ENST00000422570 483 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC092832.1-201ENST00000422934 400 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RGS17P1-201ENST00000423358 553 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RPS27P18-201ENST00000431701 247 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AL450023.3-201ENST00000440592 271 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RPL23AP33-201ENST00000442301 452 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 MRPL48P1-201ENST00000445390 636 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 DPPA3P1-201ENST00000448050 469 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RNU7-59P-201ENST00000459101 61 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 snoU13.20-201ENST00000459180 104 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RN7SL826P-201ENST00000479724 288 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RPL21P103-201ENST00000479921 488 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC008549.1-201ENST00000512900 643 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 RNU6-410P-201ENST00000517006 107 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC012339.2-201ENST00000523996 453 ntBASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.95□□□□□ -1.62
TRIM39Q9HCM9 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms