Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 RNF6P1-201ENST00000444889 1784 ntBASIC4.3□□□□□ -1.72
EBF3Q9H4W6 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
EBF3Q9H4W6 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
EBF3Q9H4W6 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 RNU6-621P-201ENST00000364752 109 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 MIR670-201ENST00000390142 98 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 RNA5SP171-201ENST00000391071 115 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 RNU4-6P-201ENST00000410804 122 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC245052.5-201ENST00000416320 649 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 CCDC58P2-201ENST00000417131 366 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AL590609.2-201ENST00000421430 368 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC093155.1-201ENST00000440164 826 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC034236.1-201ENST00000469891 373 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC104164.2-201ENST00000496953 495 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 BNIP3P22-201ENST00000593399 556 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC012603.1-201ENST00000606424 528 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC025253.1-201ENST00000613623 543 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC090517.2-201ENST00000614966 680 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC138932.5-201ENST00000617759 563 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 AC092794.2-201ENST00000620933 563 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.29□□□□□ -1.72
EBF3Q9H4W6 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
EBF3Q9H4W6 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC092162.3-201ENST00000624511 1624 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 OR52E6-202ENST00000379946 954 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 RNU6-348P-201ENST00000384386 107 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 Y_RNA.554-201ENST00000384672 102 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 BTF3P7-201ENST00000407097 488 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 TPT1P2-201ENST00000413105 503 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 JKAMPP1-201ENST00000413804 919 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 ZNF863P-201ENST00000426746 417 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 RPS7P5-201ENST00000441482 581 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 EEF1E1P1-201ENST00000446998 430 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 WASF1P1-201ENST00000447560 1131 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 NANOGNBP1-201ENST00000448444 480 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 EPS15P1-201ENST00000448836 336 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 RPL36AP33-201ENST00000450395 310 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC243772.1-201ENST00000451620 410 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 HMGB3P22-202ENST00000451823 572 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC116337.2-201ENST00000477662 156 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 ACTG1P13-201ENST00000486987 1043 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 HMGB1P36-201ENST00000487709 576 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 ARL2BPP4-201ENST00000506854 471 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC093281.2-201ENST00000510153 597 ntBASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.28□□□□□ -1.72
EBF3Q9H4W6 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 158.2 ms