Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MIR1291-201ENST00000627649 87 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.26□□□□□ -1.89
USP54Q70EL1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
USP54Q70EL1 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.26□□□□□ -1.89
USP54Q70EL1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.26□□□□□ -1.89
USP54Q70EL1 SNORD114-30-201ENST00000364448 72 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 RNU6-482P-201ENST00000391068 107 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 USP9YP20-201ENST00000419224 558 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.26□□□□□ -1.89
USP54Q70EL1 LINC00888-204ENST00000487386 421 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 AC008565.1-201ENST00000509046 885 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 SNORA70.14-201ENST00000516205 110 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 AC009063.1-201ENST00000563342 702 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 AC006254.3-201ENST00000603353 884 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 AL162233.1-201ENST00000620014 944 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 MIR6715B-201ENST00000637172 77 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP54Q70EL1 OR10AB1P-202ENST00000641219 1686 ntBASIC3.26□□□□□ -1.89
USP54Q70EL1 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
USP54Q70EL1 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP54Q70EL1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
USP54Q70EL1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP54Q70EL1 PNPT1P2-201ENST00000456768 2050 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 RNA5SP210-201ENST00000391034 120 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 EIF5P1-201ENST00000400019 1231 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.25□□□□□ -1.89
USP54Q70EL1 AIMP1P1-201ENST00000418670 937 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 HIGD1AP2-201ENST00000446367 280 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 AC133134.1-201ENST00000466800 359 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 RPL9P33-201ENST00000484311 566 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.25□□□□□ -1.89
USP54Q70EL1 AC103798.2-201ENST00000624292 632 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 AC099063.3-201ENST00000642066 185 ntBASIC3.25□□□□□ -1.89
USP54Q70EL1 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
USP54Q70EL1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP54Q70EL1 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
USP54Q70EL1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.24□□□□□ -1.89
USP54Q70EL1 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP54Q70EL1 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
USP54Q70EL1 RNU6-76P-201ENST00000384060 104 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 FAT1P1-201ENST00000406588 507 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 RNA5SP247-201ENST00000411181 105 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.24□□□□□ -1.89
USP54Q70EL1 RPL9P32-201ENST00000464118 620 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 AC103975.1-201ENST00000482506 483 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 POU5F1P7-201ENST00000508759 541 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.24□□□□□ -1.89
USP54Q70EL1 IGKV2-36-201ENST00000519999 223 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 AC107918.3-201ENST00000533272 382 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP54Q70EL1 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.24□□□□□ -1.89
USP54Q70EL1 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.24□□□□□ -1.89
USP54Q70EL1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.24□□□□□ -1.89
USP54Q70EL1 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.24□□□□□ -1.89
USP54Q70EL1 ZNF72P-201ENST00000425869 1908 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP54Q70EL1 SNORD114-1-201ENST00000362705 72 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 CYCSP45-201ENST00000402289 315 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.24□□□□□ -1.89
USP54Q70EL1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.24□□□□□ -1.89
USP54Q70EL1 AC098583.1-201ENST00000480875 255 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 ACTR6P1-201ENST00000514311 1104 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 NTAN1P1-201ENST00000603150 646 ntBASIC3.24□□□□□ -1.89
USP54Q70EL1 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
USP54Q70EL1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
USP54Q70EL1 RLIMP2-201ENST00000427891 1563 ntBASIC3.23□□□□□ -1.89
USP54Q70EL1 AL606490.7-201ENST00000433136 191 ntBASIC3.23□□□□□ -1.89
USP54Q70EL1 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.23□□□□□ -1.89
USP54Q70EL1 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.23□□□□□ -1.89
USP54Q70EL1 AC018634.1-201ENST00000437554 401 ntBASIC3.23□□□□□ -1.89
USP54Q70EL1 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.23□□□□□ -1.89
USP54Q70EL1 AL353705.4-201ENST00000449661 238 ntBASIC3.23□□□□□ -1.89
USP54Q70EL1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.23□□□□□ -1.89
USP54Q70EL1 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.23□□□□□ -1.89
USP54Q70EL1 RPL21P71-201ENST00000465598 459 ntBASIC3.23□□□□□ -1.89
USP54Q70EL1 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.23□□□□□ -1.89
USP54Q70EL1 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.23□□□□□ -1.89
USP54Q70EL1 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.23□□□□□ -1.89
USP54Q70EL1 MTCO1P9-201ENST00000505577 1534 ntBASIC3.23□□□□□ -1.89
USP54Q70EL1 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
USP54Q70EL1 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.22□□□□□ -1.89
USP54Q70EL1 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP54Q70EL1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
USP54Q70EL1 RPS3AP26-201ENST00000398259 784 ntBASIC3.22□□□□□ -1.89
USP54Q70EL1 AL158825.1-201ENST00000414735 521 ntBASIC3.22□□□□□ -1.89
USP54Q70EL1 DPH3P2-201ENST00000422618 250 ntBASIC3.22□□□□□ -1.89
USP54Q70EL1 COX6CP2-201ENST00000444980 225 ntBASIC3.22□□□□□ -1.89
USP54Q70EL1 MTND4LP12-201ENST00000448237 295 ntBASIC3.22□□□□□ -1.89
USP54Q70EL1 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.22□□□□□ -1.89
USP54Q70EL1 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.22□□□□□ -1.89
USP54Q70EL1 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP54Q70EL1 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP54Q70EL1 SYT14P1-202ENST00000600441 1448 ntBASIC3.21□□□□□ -1.89
USP54Q70EL1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP54Q70EL1 AL024474.1-201ENST00000404655 591 ntBASIC3.21□□□□□ -1.9
USP54Q70EL1 AC096638.1-201ENST00000444678 216 ntBASIC3.21□□□□□ -1.9
USP54Q70EL1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.21□□□□□ -1.9
USP54Q70EL1 CKS1BP7-201ENST00000522230 235 ntBASIC3.21□□□□□ -1.9
USP54Q70EL1 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms