Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 MTND5P9-201ENST00000503854 1755 ntBASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
VPS9D1Q9Y2B5 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC116667.1-201ENST00000604855 2072 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC110774.1-201ENST00000623567 2018 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 STAG3L4-201ENST00000352103 530 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.218-201ENST00000364218 104 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 RPL18AP14-201ENST00000417685 526 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 RAB28P5-201ENST00000427490 651 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 PPIAP27-201ENST00000453800 265 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 RPL37P6-201ENST00000460682 294 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 RPS18P6-201ENST00000476880 458 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 HMGB1P21-201ENST00000502313 581 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 DEFB108D-201ENST00000527787 222 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC023824.2-201ENST00000566185 400 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC233981.2-201ENST00000611524 1614 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 TNPO1P2-201ENST00000426249 2665 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 AC022905.1-201ENST00000503430 3048 ntBASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.56□□□□□ -1.36
VPS9D1Q9Y2B5 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC007406.5-201ENST00000570140 3170 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC010332.2-201ENST00000613083 1904 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RN7SKP191-201ENST00000364713 306 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.358-201ENST00000365491 99 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RNU6-701P-201ENST00000384059 107 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RNU6-80P-201ENST00000384195 107 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 GLULP6-201ENST00000399502 913 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 TBCAP1-201ENST00000436520 327 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RPS10P14-201ENST00000440748 502 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 HMGB1P25-201ENST00000468402 607 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RPL23AP64-201ENST00000469465 435 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC012123.2-201ENST00000485809 248 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 COX7A2P2-201ENST00000505291 250 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC106800.3-201ENST00000511389 308 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC016065.2-201ENST00000514530 444 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RNU6-971P-201ENST00000516920 106 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RPS4XP21-201ENST00000603814 750 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
VPS9D1Q9Y2B5 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms