Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.27□□□□□ -1.73
SKA1Q96BD8 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
SKA1Q96BD8 AC010198.2-201ENST00000550612 259 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 MTND4P33-201ENST00000556706 766 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 AC090615.1-201ENST00000577519 154 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA1Q96BD8 AC006116.5-201ENST00000591936 559 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 AC020914.4-201ENST00000597690 277 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 AL450336.1-201ENST00000605180 586 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 AL355810.1-201ENST00000614629 552 ntBASIC4.27□□□□□ -1.73
SKA1Q96BD8 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA1Q96BD8 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA1Q96BD8 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
SKA1Q96BD8 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SKA1Q96BD8 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
SKA1Q96BD8 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SKA1Q96BD8 RNU6-28P-201ENST00000362378 107 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 RNU6-173P-201ENST00000364215 104 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 MIR134-201ENST00000385258 73 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL592310.1-201ENST00000414330 671 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 TPMTP2-201ENST00000414372 726 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 SSR1P2-201ENST00000415208 787 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 RPL36AP36-201ENST00000418616 301 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 ELOCP9-201ENST00000418624 239 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 MTND2P9-201ENST00000422293 931 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 COX6B1P7-201ENST00000430845 235 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 COX7BP2-201ENST00000437976 242 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 USP9YP25-201ENST00000457708 443 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC010587.2-201ENST00000511727 448 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC099522.1-202ENST00000514718 367 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 FABP5P12-201ENST00000515543 389 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 MIR2114-201ENST00000516645 80 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 MTCO1P49-201ENST00000523429 802 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SKA1Q96BD8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 FAM60BP-201ENST00000578364 658 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AP001029.3-201ENST00000588063 596 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL365503.1-201ENST00000605247 905 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL391497.1-201ENST00000608671 547 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC064801.1-201ENST00000612025 407 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL050303.3-201ENST00000613704 284 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC091046.2-201ENST00000620775 665 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC010608.2-201ENST00000624830 470 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SKA1Q96BD8 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AP001148.1-201ENST00000624124 2359 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SKA1Q96BD8 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA1Q96BD8 AL645937.1-201ENST00000641739 1652 ntBASIC4.26□□□□□ -1.73
SKA1Q96BD8 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA1Q96BD8 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA1Q96BD8 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA1Q96BD8 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA1Q96BD8 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA1Q96BD8 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA1Q96BD8 RNU6-1155P-201ENST00000363554 107 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 MIR554-201ENST00000384874 96 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 RPL23AP29-201ENST00000397284 453 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 AP000567.1-201ENST00000406413 156 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 RNA5SP36-201ENST00000410197 133 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 RNU4-65P-201ENST00000410473 140 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 RNU2-47P-201ENST00000410649 186 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 AC092647.1-201ENST00000420654 287 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 RBMY1KP-201ENST00000423480 476 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 AL157831.1-201ENST00000426134 473 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 SGO1P2-201ENST00000429458 1589 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 SNORA71B-202ENST00000439232 272 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 CR769776.1-201ENST00000441254 787 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA1Q96BD8 RNU7-136P-201ENST00000458819 69 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 RPL35AP15-201ENST00000468042 339 ntBASIC4.25□□□□□ -1.73
SKA1Q96BD8 RPL7P18-201ENST00000478965 734 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms