Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IGKV2-36-201ENST00000519999 223 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC004923.2-201ENST00000529649 369 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA1P55317 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA1P55317 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA1P55317 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA1P55317 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.7□□□□□ -1.98
FOXA1P55317 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA1P55317 OR2BH1P-201ENST00000608850 864 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 U6.48-201ENST00000618523 106 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC006111.3-201ENST00000622137 383 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 AC024023.1-201ENST00000624530 922 ntBASIC2.7□□□□□ -1.98
FOXA1P55317 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
FOXA1P55317 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA1P55317 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA1P55317 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
FOXA1P55317 SNORD115-48-201ENST00000364764 76 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 RNU6-98P-201ENST00000384173 107 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA1P55317 AC004987.3-201ENST00000413879 771 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 MTND4LP7-201ENST00000431728 294 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 ZNF965P-201ENST00000432501 817 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA1P55317 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA1P55317 AL671855.1-201ENST00000446875 1203 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 MTND5P8-201ENST00000449817 1083 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AL513343.1-201ENST00000451818 792 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA1P55317 RPL23AP11-201ENST00000475260 469 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 RPS4XP13-201ENST00000483219 789 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA1P55317 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA1P55317 SNORA31.13-201ENST00000516624 135 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 RN7SKP57-201ENST00000517248 293 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA1P55317 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA1P55317 PTP4A1P6-201ENST00000531034 478 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA1P55317 AC107016.2-201ENST00000547968 190 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA1P55317 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.69□□□□□ -1.98
FOXA1P55317 MIR3605-201ENST00000583214 100 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AC011471.1-201ENST00000585766 187 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 ZNF861P-201ENST00000588126 639 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 PCNAP1-202ENST00000595299 752 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA1P55317 AC090425.2-201ENST00000608818 501 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA1P55317 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA1P55317 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA1P55317 AC096644.4-201ENST00000563417 2912 ntBASIC2.69□□□□□ -1.98
FOXA1P55317 MTND4P31-201ENST00000425607 1343 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA1P55317 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA1P55317 SNORA31-201ENST00000362607 130 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 SNORD51.1-201ENST00000365405 77 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 RNU6-883P-201ENST00000384597 107 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 MIR142-201ENST00000384835 87 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 SNORA11C-201ENST00000408532 129 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC234782.4-201ENST00000417646 1048 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 LINC01347-201ENST00000417964 355 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC022018.1-201ENST00000430685 241 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 CYCSP32-201ENST00000440548 321 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 GSTA11P-201ENST00000452866 669 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 RPL37P3-201ENST00000456825 293 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC092754.2-201ENST00000463506 460 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC006483.1-201ENST00000487308 313 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 MTATP6P22-201ENST00000507369 598 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA1P55317 GMPSP1-201ENST00000514075 579 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 SCARNA13-201ENST00000516672 275 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 AP002404.1-201ENST00000532005 451 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC010198.2-201ENST00000550612 259 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 POLR2KP1-201ENST00000553226 168 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AL355836.1-201ENST00000555951 870 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC069304.3-201ENST00000603938 1084 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC005000.2-201ENST00000605468 310 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC104307.1-201ENST00000616142 196 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 CR381653.2-201ENST00000624041 768 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
FOXA1P55317 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA1P55317 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
FOXA1P55317 AC000403.1-201ENST00000613696 3585 ntBASIC2.68□□□□□ -1.98
FOXA1P55317 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms