Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HIGD1AP2-201ENST00000446367 280 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HMGA1P17096 AC087385.1-201ENST00000475062 312 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 AC026436.1-201ENST00000510537 270 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.52□□□□□ -2.01
HMGA1P17096 RNA5SP385-201ENST00000515947 110 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 SNORA31.1-201ENST00000515993 133 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 SNORA31.5-201ENST00000516190 133 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.52□□□□□ -2.01
HMGA1P17096 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HMGA1P17096 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC2.52□□□□□ -2.01
HMGA1P17096 AC021269.2-201ENST00000532318 330 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.52□□□□□ -2.01
HMGA1P17096 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.52□□□□□ -2.01
HMGA1P17096 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.52□□□□□ -2.01
HMGA1P17096 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.52□□□□□ -2.01
HMGA1P17096 AC006254.3-201ENST00000603353 884 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 BX664608.1-201ENST00000610519 487 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 AC002076.2-201ENST00000617362 122 ntBASIC2.52□□□□□ -2.01
HMGA1P17096 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.52□□□□□ -2.01
HMGA1P17096 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HMGA1P17096 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HMGA1P17096 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HMGA1P17096 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.52□□□□□ -2.01
HMGA1P17096 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HMGA1P17096 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC2.51□□□□□ -2.01
HMGA1P17096 DYNLT3P1-201ENST00000378574 347 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HMGA1P17096 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
HMGA1P17096 MIR1261-201ENST00000408659 82 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 AL158825.1-201ENST00000414735 521 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.51□□□□□ -2.01
HMGA1P17096 MTCO2P17-201ENST00000424336 677 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.51□□□□□ -2.01
HMGA1P17096 AC099063.2-201ENST00000446360 662 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.51□□□□□ -2.01
HMGA1P17096 RPL9P32-201ENST00000464118 620 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 ANXA2P1-201ENST00000505539 926 ntBASIC2.51□□□□□ -2.01
HMGA1P17096 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.51□□□□□ -2.01
HMGA1P17096 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.51□□□□□ -2.01
HMGA1P17096 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.51□□□□□ -2.01
HMGA1P17096 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.51□□□□□ -2.01
HMGA1P17096 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.51□□□□□ -2.01
HMGA1P17096 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HMGA1P17096 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.51□□□□□ -2.01
HMGA1P17096 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HMGA1P17096 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HMGA1P17096 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.5□□□□□ -2.01
HMGA1P17096 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.5□□□□□ -2.01
HMGA1P17096 AC245100.2-201ENST00000454544 1679 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HMGA1P17096 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
HMGA1P17096 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 Z99127.2-201ENST00000441426 334 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 AC005921.1-201ENST00000510589 286 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.5□□□□□ -2.01
HMGA1P17096 MTND5P21-201ENST00000531961 522 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 EIF5A2P1-201ENST00000564027 460 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.5□□□□□ -2.01
HMGA1P17096 AC061975.8-201ENST00000587058 721 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 AC023043.3-201ENST00000593113 385 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.5□□□□□ -2.01
HMGA1P17096 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
HMGA1P17096 AC079228.1-201ENST00000624774 1049 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.5□□□□□ -2.01
HMGA1P17096 U6.98-201ENST00000637157 84 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HMGA1P17096 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HMGA1P17096 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.5□□□□□ -2.01
HMGA1P17096 MAPK10-362ENST00000641864 4484 ntBASIC2.5□□□□□ -2.01
HMGA1P17096 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.49□□□□□ -2.01
HMGA1P17096 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HMGA1P17096 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HMGA1P17096 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
HMGA1P17096 MIR142-201ENST00000384835 87 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
HMGA1P17096 SEPT7P2-202ENST00000398921 823 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 CFTRP1-201ENST00000456646 183 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.49□□□□□ -2.01
HMGA1P17096 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.49□□□□□ -2.01
HMGA1P17096 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.49□□□□□ -2.01
HMGA1P17096 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.49□□□□□ -2.01
HMGA1P17096 RNA5SP281-201ENST00000516504 135 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.49□□□□□ -2.01
HMGA1P17096 AC007536.1-201ENST00000533382 349 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HMGA1P17096 AC009063.1-201ENST00000563342 702 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 NF1P5-201ENST00000588287 448 ntBASIC2.49□□□□□ -2.01
HMGA1P17096 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.49□□□□□ -2.01
HMGA1P17096 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HMGA1P17096 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HMGA1P17096 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.48□□□□□ -2.01
HMGA1P17096 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
HMGA1P17096 SNORA41-201ENST00000384675 132 ntBASIC2.48□□□□□ -2.01
HMGA1P17096 AL162578.1-201ENST00000406202 378 ntBASIC2.48□□□□□ -2.01
HMGA1P17096 RN7SKP223-201ENST00000410582 62 ntBASIC2.48□□□□□ -2.01
HMGA1P17096 RN7SKP140-201ENST00000411196 284 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms