Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RPS23P3-201ENST00000470993 430 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC010631.1-201ENST00000474150 156 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC068781.1-201ENST00000488231 618 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC010343.2-201ENST00000510162 224 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC106800.3-201ENST00000511389 308 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC005798.1-201ENST00000513715 387 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RNU2-53P-201ENST00000516257 147 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RNA5SP384-201ENST00000516615 116 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RNU4-77P-201ENST00000516692 156 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RN7SKP82-201ENST00000516786 223 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RNU6-677P-201ENST00000516914 101 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 IGKV2-18-201ENST00000522607 343 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 HSBP1P1-201ENST00000555205 166 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 SUB1P3-201ENST00000564581 315 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AL589674.2-201ENST00000604304 337 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 MIR6809-201ENST00000612189 116 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 MIR8062-201ENST00000621515 85 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 DOCK11P1-201ENST00000553480 5932 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RN7SKP160-201ENST00000363804 340 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RNU6-266P-201ENST00000364225 107 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RNU6-450P-201ENST00000364654 107 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RPS23P10-201ENST00000416185 486 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC011816.1-201ENST00000441346 546 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 GAPDHP27-201ENST00000447427 1020 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 SNX18P26-201ENST00000458433 740 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC084198.1-201ENST00000477747 402 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 CEACAMP10-202ENST00000495431 496 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RNU6-352P-201ENST00000516908 107 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC131281.1-201ENST00000522984 164 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 COX6CP7-201ENST00000597056 208 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC104763.2-201ENST00000604179 382 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RPL12P48-201ENST00000605620 304 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 HMGN2P28-201ENST00000606102 262 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 MIR7159-201ENST00000620587 66 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AC022325.1-201ENST00000502748 2199 ntBASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LIMD1Q9UGP4 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 MTND5P7-201ENST00000413558 1798 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 Y_RNA.480-201ENST00000384364 102 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 RNU6-306P-201ENST00000384617 107 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 RPS3AP2-201ENST00000407190 754 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 MIR1250-201ENST00000408098 113 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC243428.1-201ENST00000421099 264 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AL355433.1-201ENST00000422804 300 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 RPL30P3-201ENST00000424262 333 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC104634.1-201ENST00000452720 462 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms