Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC1.82□□□□□ -2.12
PRKDCP78527 AC008083.2-201ENST00000546707 476 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 CASC16-202ENST00000563844 610 ntTSL 3 BASIC1.82□□□□□ -2.12
PRKDCP78527 AC008277.2-201ENST00000605196 797 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC1.82□□□□□ -2.12
PRKDCP78527 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PRKDCP78527 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 SNORA46-201ENST00000384762 135 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.82□□□□□ -2.12
PRKDCP78527 RNA5SP217-201ENST00000515959 91 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC025881.1-201ENST00000518851 512 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC103710.2-201ENST00000609912 942 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 MIR6873-201ENST00000622788 63 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AL109809.4-201ENST00000603520 2185 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC027514.1-201ENST00000588561 1603 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 U3.11-201ENST00000364476 212 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AL583834.1-201ENST00000406943 343 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AL590084.1-201ENST00000407885 387 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC1.81□□□□□ -2.12
PRKDCP78527 AL390334.1-201ENST00000556395 450 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC1.81□□□□□ -2.12
PRKDCP78527 AC109315.1-201ENST00000584143 1347 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
PRKDCP78527 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 HMGB3P11-201ENST00000440127 604 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 ELOCP13-201ENST00000443934 329 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AL035551.1-201ENST00000446931 348 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AP001086.1-201ENST00000494882 321 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 RNU4ATAC3P-201ENST00000516699 126 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 HMGB1P19-201ENST00000517578 577 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.81□□□□□ -2.12
PRKDCP78527 AC026464.5-201ENST00000562497 722 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AC016590.3-201ENST00000611171 753 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.81□□□□□ -2.12
PRKDCP78527 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 MTCO1P22-201ENST00000604619 1360 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 SNORD62.1-201ENST00000362541 86 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AL591416.1-201ENST00000404015 867 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AC245054.2-201ENST00000415639 319 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AC093278.1-201ENST00000494700 600 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 RN7SKP24-201ENST00000515888 284 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 RNA5SP281-201ENST00000516504 135 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 ZNF861P-201ENST00000588126 639 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC1.81□□□□□ -2.12
PRKDCP78527 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC1.81□□□□□ -2.12
PRKDCP78527 AC011460.1-201ENST00000636268 1834 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 RNA5SP270-201ENST00000411361 118 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 RPL31P12-201ENST00000422587 358 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.81□□□□□ -2.12
PRKDCP78527 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC1.81□□□□□ -2.12
PRKDCP78527 RNU6-1231P-201ENST00000517185 103 ntBASIC1.81□□□□□ -2.12
PRKDCP78527 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
PRKDCP78527 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 Z82209.1-201ENST00000422141 2135 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
PRKDCP78527 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
PRKDCP78527 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
PRKDCP78527 AC107081.1-201ENST00000414975 361 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 VDAC1P3-201ENST00000434069 851 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 ALDH7A1P3-201ENST00000492517 345 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 AC096725.1-201ENST00000514266 313 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
PRKDCP78527 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
PRKDCP78527 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
PRKDCP78527 AC007064.1-201ENST00000412238 351 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 TRMT112P2-201ENST00000512910 132 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC1.8□□□□□ -2.12
PRKDCP78527 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
PRKDCP78527 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 CUL1P1-201ENST00000509510 2425 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 RAD1P1-201ENST00000231383 813 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC1.8□□□□□ -2.12
PRKDCP78527 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC1.8□□□□□ -2.12
PRKDCP78527 AC108078.2-201ENST00000510750 236 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 HPRT1P3-201ENST00000539521 576 ntBASIC1.8□□□□□ -2.12
PRKDCP78527 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
PRKDCP78527 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC1.8□□□□□ -2.12
PRKDCP78527 RPL23AP42-201ENST00000471152 471 ntBASIC1.79□□□□□ -2.12
PRKDCP78527 KCTD9P5-201ENST00000504141 1170 ntBASIC1.79□□□□□ -2.12
PRKDCP78527 AC067747.1-201ENST00000608026 250 ntBASIC1.79□□□□□ -2.12
PRKDCP78527 METTL8-218ENST00000638989 876 ntTSL 5 BASIC1.79□□□□□ -2.12
PRKDCP78527 METTL8-219ENST00000640734 726 ntTSL 2 BASIC1.79□□□□□ -2.12
PRKDCP78527 AC008264.2-201ENST00000610193 3731 ntBASIC1.79□□□□□ -2.12
PRKDCP78527 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
PRKDCP78527 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms